RNA–Protein interactions for RNA: YDR486C

VPS60, Transcript of Protein involved in late endosome to vacuole transport, yeast

Gene VPS60, Length 690 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
VPS60	YDR486C	YOR022C	Q12204	715 aa		11.49	□□□□□ -0.57
VPS60	YDR486C	RSA4	P25382	515 aa	Known RBP	11.48	□□□□□ -0.57
VPS60	YDR486C	YKL050C	P35736	922 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	GRS1	P38088	690 aa	Known RBP	11.48	□□□□□ -0.57
VPS60	YDR486C	TCD1	P38756	429 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	DYS1	P38791	387 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	ALT2	P52892	507 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	YGR021W	P53212	290 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	CTF3	Q12748	733 aa		11.48	□□□□□ -0.57
VPS60	YDR486C	VPS13	Q07878	3144 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	GAL10	P04397	699 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	SEC21	P32074	935 aa	Known RBP	11.47	□□□□□ -0.57
VPS60	YDR486C	CSE2	P33308	149 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	KAP123	P40069	1113 aa	Known RBP	11.47	□□□□□ -0.57
VPS60	YDR486C	YFL040W	P43562	540 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	PHO86	P46956	311 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	STB4	P50104	949 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	YGR035C	P53222	116 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	BOP3	P53958	396 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	SYH1	Q02875	849 aa	Known RBP	11.47	□□□□□ -0.57
VPS60	YDR486C	MAG2	Q06436	670 aa	Known RBP	11.47	□□□□□ -0.57
VPS60	YDR486C	VAC14	Q06708	880 aa		11.47	□□□□□ -0.57
VPS60	YDR486C	DNL4	Q08387	944 aa	Predicted RBP	11.47	□□□□□ -0.57
VPS60	YDR486C	ERG11	P10614	530 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	POA1	P38218	177 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	FIR1	P40020	876 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	SPO74	P45819	413 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	FOL2	P51601	243 aa	Known RBP	11.46	□□□□□ -0.57
VPS60	YDR486C	ALT1	P52893	592 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	YGR130C	P53278	816 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	NGL3	Q03210	505 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	SML1	Q04964	104 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	YLR455W	Q06188	304 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	YPR027C	Q12079	277 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	MCM16	Q12262	181 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	LAA1	P39526	2014 aa		11.46	□□□□□ -0.57
VPS60	YDR486C	RPS3	P05750	240 aa	Known RBP	11.45	□□□□□ -0.58
VPS60	YDR486C	TIF1	P10081	395 aa	Known RBP	11.45	□□□□□ -0.58
VPS60	YDR486C	CAD1	P24813	409 aa	Known RBP	11.45	□□□□□ -0.58
VPS60	YDR486C	SRB4	P32569	687 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	HEL1	P36113	551 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	AGP2	P38090	596 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	YTA12	P40341	825 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	ESL1	P40456	1118 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	EEB1	Q02891	456 aa		11.45	□□□□□ -0.58
VPS60	YDR486C	CHS1	P08004	1131 aa		11.44	□□□□□ -0.58
VPS60	YDR486C	CKI1	P20485	582 aa		11.44	□□□□□ -0.58
VPS60	YDR486C	CYS3	P31373	394 aa	Known RBP	11.44	□□□□□ -0.58
VPS60	YDR486C	RRN6	P32786	894 aa		11.44	□□□□□ -0.58
VPS60	YDR486C	BCH2	P36122	765 aa		11.44	□□□□□ -0.58
VPS60	YDR486C	EFB1	P32471	206 aa	Known RBP	11.43	□□□□□ -0.58
VPS60	YDR486C	TBS1	P38114	1094 aa		11.43	□□□□□ -0.58
VPS60	YDR486C	SLX1	P38324	304 aa		11.43	□□□□□ -0.58
VPS60	YDR486C	NDC80	P40460	691 aa		11.43	□□□□□ -0.58
VPS60	YDR486C	BTN2	P53286	410 aa		11.43	□□□□□ -0.58
VPS60	YDR486C	YMR018W	Q04364	514 aa		11.43	□□□□□ -0.58
VPS60	YDR486C	YER152C	P10356	443 aa		11.42	□□□□□ -0.58
VPS60	YDR486C	BLI1	P35727	113 aa		11.42	□□□□□ -0.58
VPS60	YDR486C	YMR1	P47147	688 aa	Known RBP RIP-Chip data	11.42	□□□□□ -0.58	not detected
VPS60	YDR486C	KAP114	P53067	1004 aa		11.42	□□□□□ -0.58
VPS60	YDR486C	PUS2	P53167	370 aa		11.42	□□□□□ -0.58
VPS60	YDR486C	NOP13	P53883	403 aa	Known RBP RIP-Chip data	11.42	□□□□□ -0.58	not detected
VPS60	YDR486C	DIG1	Q03063	452 aa	Known RBP	11.42	□□□□□ -0.58
VPS60	YDR486C	YDR222W	Q04925	415 aa		11.42	□□□□□ -0.58
VPS60	YDR486C	BIO2	P32451	375 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	GYP6	P32806	458 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	WHI3	P34761	661 aa	Known RBP	11.41	□□□□□ -0.58
VPS60	YDR486C	PSY2	P40164	858 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	YJR054W	P47114	497 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	YGR111W	P53265	400 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	STP1	Q00947	519 aa		11.41	□□□□□ -0.58
VPS60	YDR486C	RCR2	Q03446	210 aa	Known RBP	11.41	□□□□□ -0.58
VPS60	YDR486C	CIT2	P08679	460 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	VBA3	P25594	458 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	VBA5	P36172	582 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	NCL1	P38205	684 aa	Known RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	CBR1	P38626	284 aa	Known RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	GEM1	P39722	662 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	YGL036W	P53185	909 aa	Predicted RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	GPD1	Q00055	391 aa	Known RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	HOS3	Q02959	697 aa	Known RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	ESC8	Q08119	714 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	REC8	Q12188	680 aa		11.4	□□□□□ -0.58
VPS60	YDR486C	PKH2	Q12236	1081 aa	Known RBP	11.4	□□□□□ -0.58
VPS60	YDR486C	BI2	P03873	423 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	BI4	P03879	638 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	PET111	P08468	800 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	VMA4	P22203	233 aa	Known RBP	11.39	□□□□□ -0.59
VPS60	YDR486C	VPS3	P23643	1011 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	NOP4	P37838	685 aa	Known RBP	11.39	□□□□□ -0.59
VPS60	YDR486C	TDA3	P38758	523 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	SMF1	P38925	575 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	YEL075C	P39972	122 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	BUD16	P39988	312 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	OPT1	P40897	799 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	POL31	P46957	487 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	SPC98	P53540	846 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	JJJ1	P53863	590 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	VPS60	Q03390	229 aa		11.39	□□□□□ -0.59
VPS60	YDR486C	MZM1	Q03429	123 aa	Predicted RBP	11.39	□□□□□ -0.59

Retrieved 100 of 5,963 RNA–protein pairs in 122.1 ms