RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	YBR259W	P38338	688 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	MGS1	P40151	587 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	AIM21	P40563	679 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	UBC9	P50623	157 aa	Predicted RBP	4.74	□□□□□ -1.65
RUB1	YDR139C	MET13	P53128	600 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	ORC4	P54791	529 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	DLT1	Q04216	342 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	GUD1	Q07729	489 aa		4.74	□□□□□ -1.65
RUB1	YDR139C	ERG4	P25340	473 aa		4.73	□□□□□ -1.65
RUB1	YDR139C	YKR018C	P36114	725 aa		4.73	□□□□□ -1.65
RUB1	YDR139C	MIP6	P38760	659 aa	Known RBP	4.73	□□□□□ -1.65
RUB1	YDR139C	MSE1	P48525	536 aa		4.73	□□□□□ -1.65
RUB1	YDR139C	PCL10	P53124	433 aa		4.73	□□□□□ -1.65
RUB1	YDR139C	MRPS35	P53292	345 aa		4.73	□□□□□ -1.65
RUB1	YDR139C	CAF20	P12962	161 aa	Known RBP	4.72	□□□□□ -1.65
RUB1	YDR139C	CRP1	P38845	465 aa	Known RBP	4.72	□□□□□ -1.65
RUB1	YDR139C	ECM1	P39715	212 aa		4.72	□□□□□ -1.65
RUB1	YDR139C	ELO3	P40319	345 aa		4.72	□□□□□ -1.65
RUB1	YDR139C	PMT3	P47190	753 aa		4.72	□□□□□ -1.65
RUB1	YDR139C	PRP31	P49704	494 aa	Predicted RBP	4.72	□□□□□ -1.65
RUB1	YDR139C	AMA1	P50082	593 aa		4.72	□□□□□ -1.65
RUB1	YDR139C	PUS9	Q12069	462 aa		4.72	□□□□□ -1.65
RUB1	YDR139C	CCR4	P31384	837 aa	Known RBP	4.71	□□□□□ -1.66
RUB1	YDR139C	YGL081W	P53156	320 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	SUN4	P53616	420 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	YNR029C	P53729	429 aa	Known RBP	4.71	□□□□□ -1.66
RUB1	YDR139C	KIN4	Q01919	800 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	RNT1	Q02555	471 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	THI73	Q07904	523 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	YLR040C	Q07988	224 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	TGL5	Q12043	749 aa		4.71	□□□□□ -1.66
RUB1	YDR139C	APT2	P36973	181 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	SUL1	P38359	859 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	YIR042C	P40586	236 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	MUP1	P50276	574 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	GAD1	Q04792	585 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	TRM13	Q12383	476 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	ATG11	Q12527	1178 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	NUP145	P49687	1317 aa		4.7	□□□□□ -1.66
RUB1	YDR139C	LAT1	P12695	482 aa	Known RBP	4.69	□□□□□ -1.66
RUB1	YDR139C	ADE2	P21264	571 aa	Known RBP	4.69	□□□□□ -1.66
RUB1	YDR139C	APL2	P36000	726 aa	Predicted RBP	4.69	□□□□□ -1.66
RUB1	YDR139C	YJR096W	P47137	282 aa		4.69	□□□□□ -1.66
RUB1	YDR139C	ARG5,6	Q01217	863 aa		4.69	□□□□□ -1.66
RUB1	YDR139C	MCM21	Q06675	368 aa		4.69	□□□□□ -1.66
RUB1	YDR139C	FRE5	Q08908	694 aa		4.69	□□□□□ -1.66
RUB1	YDR139C	PPR1	P07272	904 aa	Predicted RBP	4.68	□□□□□ -1.66
RUB1	YDR139C	ALG7	P07286	448 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	SSD1	P24276	1250 aa	Known RBP RIP-Chip data	4.68	□□□□□ -1.66	not detected
RUB1	YDR139C	MNN4	P36044	1178 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	TYS1	P36421	394 aa	Known RBP	4.68	□□□□□ -1.66
RUB1	YDR139C	YBR053C	P38235	358 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	CKB2	P38930	258 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	TEX1	P53851	422 aa	Known RBP	4.68	□□□□□ -1.66
RUB1	YDR139C	ARP4	P80428	489 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	UME1	Q03010	460 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	YOL073C	Q08232	322 aa		4.68	□□□□□ -1.66
RUB1	YDR139C	PRP19	P32523	503 aa	Known RBP	4.67	□□□□□ -1.66
RUB1	YDR139C	CHS7	P38843	316 aa		4.67	□□□□□ -1.66
RUB1	YDR139C	YJR039W	P47107	1121 aa		4.67	□□□□□ -1.66
RUB1	YDR139C	GPD1	Q00055	391 aa	Known RBP	4.67	□□□□□ -1.66
RUB1	YDR139C	REC102	Q02721	264 aa		4.67	□□□□□ -1.66
RUB1	YDR139C	PNS1	Q12412	539 aa		4.67	□□□□□ -1.66
RUB1	YDR139C	TRZ1	P36159	838 aa	Predicted RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	MAL31	P38156	614 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	YHR112C	P38716	378 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	SSZ1	P38788	538 aa	Known RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	RET2	P43621	546 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	SET2	P46995	733 aa	Known RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	YGR237C	P50089	785 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	BRE5	P53741	515 aa	Known RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	MTQ2	Q03920	221 aa	Predicted RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	CTK1	Q03957	528 aa	Known RBP	4.66	□□□□□ -1.66
RUB1	YDR139C	ADY4	Q05955	493 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	DCS2	Q12123	353 aa		4.66	□□□□□ -1.66
RUB1	YDR139C	APN2	P38207	520 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	TDA3	P38758	523 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	GID8	P40208	455 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	HOS4	P40480	1083 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	YJL163C	P46996	555 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	BFA1	P47113	574 aa		4.65	□□□□□ -1.67
RUB1	YDR139C	YKR075C	P36155	307 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	BAP3	P41815	604 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	CTF4	Q01454	927 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	LEE1	Q02799	301 aa	Known RBP	4.64	□□□□□ -1.67
RUB1	YDR139C	HMO1	Q03973	246 aa	Known RBP	4.64	□□□□□ -1.67
RUB1	YDR139C	HFD1	Q04458	532 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	OMS1	Q06668	471 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	IRC13	Q08630	104 aa		4.64	□□□□□ -1.67
RUB1	YDR139C	FAP7	Q12055	197 aa	Predicted RBP	4.64	□□□□□ -1.67
RUB1	YDR139C	PYC1	P11154	1178 aa	Known RBP	4.63	□□□□□ -1.67
RUB1	YDR139C	AKL1	P38080	1108 aa	Known RBP	4.63	□□□□□ -1.67
RUB1	YDR139C	CCT3	P39077	534 aa	Known RBP	4.63	□□□□□ -1.67
RUB1	YDR139C	UBP12	P39538	1254 aa		4.63	□□□□□ -1.67
RUB1	YDR139C	GZF3	P42944	551 aa	Known RBP	4.63	□□□□□ -1.67
RUB1	YDR139C	DAS1	P47005	663 aa		4.63	□□□□□ -1.67
RUB1	YDR139C	YGR153W	P48238	217 aa		4.63	□□□□□ -1.67
RUB1	YDR139C	GPG1	P53130	126 aa		4.63	□□□□□ -1.67
RUB1	YDR139C	YTM1	Q12024	460 aa	Predicted RBP	4.63	□□□□□ -1.67
RUB1	YDR139C	RNR1	P21524	888 aa	Known RBP	4.62	□□□□□ -1.67

Retrieved 100 of 5,963 RNA–protein pairs in 148.7 ms