RNA–Protein interactions for RNA: ENST00000606749.1

CUX1-219, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-219ENST00000606749 ANP32CO43423 234 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 ECE2O60344 883 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 MICALL2Q8IY33 904 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 TRPM4Q8TD43 1214 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 GPR101Q96P66 508 aaPredicted RBP9.79□□□□□ -0.84
CUX1-219ENST00000606749 CCDC85AQ96PX6 553 aaPredicted RBP9.79□□□□□ -0.84
CUX1-219ENST00000606749 GLIS2Q9BZE0 524 aaPredicted RBP9.79□□□□□ -0.84
CUX1-219ENST00000606749 ZC3H12CQ9C0D7 883 aaKnown RBP9.79□□□□□ -0.84
CUX1-219ENST00000606749 WBP1LQ9NX94 342 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 ANKIB1Q9P2G1 1089 aa9.79□□□□□ -0.84
CUX1-219ENST00000606749 NEURL1BA8MQ27 555 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 H7C1W4 665 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 VAMP4O75379 141 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 UFL1O94874 794 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 VIL1P09327 827 aaKnown RBP9.78□□□□□ -0.84
CUX1-219ENST00000606749 NEXNQ0ZGT2 675 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 CWF19L2Q2TBE0 894 aaKnown RBP9.78□□□□□ -0.84
CUX1-219ENST00000606749 CDC37L1Q7L3B6 337 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 SAMD7Q7Z3H4 446 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 ANKRD18AQ8IVF6 992 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 WDR63Q8IWG1 891 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 TTLL11Q8NHH1 800 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 GGA1Q9UJY5 639 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 SALL2Q9Y467 1007 aaPredicted RBP9.78□□□□□ -0.84
CUX1-219ENST00000606749 TLL2Q9Y6L7 1015 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 LRRC37AA6NMS7 1700 aa9.78□□□□□ -0.84
CUX1-219ENST00000606749 RTL9Q8NET4 1388 aa9.77□□□□□ -0.84
CUX1-219ENST00000606749 G3V3G9 751 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 CELF2O95319 508 aaKnown RBP9.77□□□□□ -0.85
CUX1-219ENST00000606749 EGFRP00533 1210 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 RPS12P25398 132 aaKnown RBP9.77□□□□□ -0.85
CUX1-219ENST00000606749 ECE1P42892 770 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 CTCFP49711 727 aaPredicted RBP9.77□□□□□ -0.85
CUX1-219ENST00000606749 CTSWP56202 376 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 MAP2K1Q02750 393 aaPredicted RBP9.77□□□□□ -0.85
CUX1-219ENST00000606749 DCAF8Q5TAQ9 597 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 CYP4F22Q6NT55 531 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 AIDAQ96BJ3 306 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 CAPNS2Q96L46 248 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 CDC5LQ99459 802 aaKnown RBP9.77□□□□□ -0.85
CUX1-219ENST00000606749 PRDM10Q9NQV6 1147 aa9.77□□□□□ -0.85
CUX1-219ENST00000606749 WTIPA6NIX2 430 aaPredicted RBP9.76□□□□□ -0.85
CUX1-219ENST00000606749 ATP2B4P23634 1241 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 FLIIQ13045 1269 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 GCKRQ14397 625 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 TBC1D10BQ4KMP7 808 aaPredicted RBP9.76□□□□□ -0.85
CUX1-219ENST00000606749 RBM26Q5T8P6 1007 aaKnown RBP9.76□□□□□ -0.85
CUX1-219ENST00000606749 SAPCD2Q86UD0 394 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 USP48Q86UV5 1035 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 GREM2Q9H772 168 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 BSDC1Q9NW68 430 aaPredicted RBP9.76□□□□□ -0.85
CUX1-219ENST00000606749 MINPP1Q9UNW1 487 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 FANCIQ9NVI1 1328 aa9.76□□□□□ -0.85
CUX1-219ENST00000606749 CAPN15O75808 1086 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 LBX1P52954 281 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 CASP7P55210 303 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 EXOSC9Q06265 439 aaKnown RBP9.75□□□□□ -0.85
CUX1-219ENST00000606749 DLK2Q6UY11 383 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 PAXIP1Q6ZW49 1069 aaPredicted RBP9.75□□□□□ -0.85
CUX1-219ENST00000606749 UBE3BQ7Z3V4 1068 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 HHIPL1Q96JK4 782 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 PLA2G12BQ9BX93 195 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 ZNF408Q9H9D4 720 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 XDHP47989 1333 aa9.75□□□□□ -0.85
CUX1-219ENST00000606749 TRPM7Q96QT4 1865 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 CSF1RP07333 972 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 HSPA8P11142 646 aaKnown RBP9.74□□□□□ -0.85
CUX1-219ENST00000606749 MAP2K2P36507 400 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 GRM1Q13255 1194 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 FKBP5Q13451 457 aaPredicted RBP9.74□□□□□ -0.85
CUX1-219ENST00000606749 KRT26Q7Z3Y9 468 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 PODNQ7Z5L7 613 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 AGBL3Q8NEM8 1001 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 LINS1Q8NG48 757 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 DNAAF4Q8WXU2 420 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 DCPSQ96C86 337 aaKnown RBP9.74□□□□□ -0.85
CUX1-219ENST00000606749 GMLQ99445 158 aa9.74□□□□□ -0.85
CUX1-219ENST00000606749 SPINK5Q9NQ38 1064 aaPredicted RBP9.74□□□□□ -0.85
CUX1-219ENST00000606749 USP17L3A6NCW0 530 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 USP17L4A6NCW7 530 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 AOC2O75106 756 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 CCT4P50991 539 aaKnown RBP9.73□□□□□ -0.85
CUX1-219ENST00000606749 ZNF280AP59817 542 aaPredicted RBP9.73□□□□□ -0.85
CUX1-219ENST00000606749 KIF4BQ2VIQ3 1234 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 RSBN1LQ6PCB5 846 aaPredicted RBP9.73□□□□□ -0.85
CUX1-219ENST00000606749 USP17L1Q7RTZ2 530 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 FAM9BQ8IZU0 186 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 MYH16Q9H6N6 1097 aa9.73□□□□□ -0.85
CUX1-219ENST00000606749 SCN9AQ15858 1988 aa9.72□□□□□ -0.85
CUX1-219ENST00000606749 ITGA6P23229 1130 aa9.72□□□□□ -0.85
CUX1-219ENST00000606749 IGHMBP2P38935 993 aaKnown RBP9.72□□□□□ -0.85
CUX1-219ENST00000606749 SCARF1Q14162 830 aa9.72□□□□□ -0.85
CUX1-219ENST00000606749 BEGAINQ9BUH8 593 aa9.72□□□□□ -0.85
CUX1-219ENST00000606749 LEMD3Q9Y2U8 911 aa9.72□□□□□ -0.85
CUX1-219ENST00000606749 ASTN2O75129 1339 aaPredicted RBP9.72□□□□□ -0.85
CUX1-219ENST00000606749 POLR2AP24928 1970 aaKnown RBP9.72□□□□□ -0.85
CUX1-219ENST00000606749 ADM5C9JUS6 153 aa9.71□□□□□ -0.86
CUX1-219ENST00000606749 F6X3S4 739 aa9.71□□□□□ -0.86
CUX1-219ENST00000606749 USP17L8P0C7I0 530 aa9.71□□□□□ -0.86
CUX1-219ENST00000606749 HUNKP57058 714 aa9.71□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms