RNA–Protein interactions for RNA: ENST00000600289.6

LSM4-206, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 1,113 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-206ENST00000600289 SRCIN1Q9C0H9 1055 aa20.51■□□□□ 0.87
LSM4-206ENST00000600289 TAF1DQ9H5J8 278 aaPredicted RBP20.51■□□□□ 0.87
LSM4-206ENST00000600289 RARSP54136 660 aaKnown RBP20.5■□□□□ 0.87
LSM4-206ENST00000600289 RPS8P62241 208 aaKnown RBP20.5■□□□□ 0.87
LSM4-206ENST00000600289 SLC51AQ86UW1 340 aa20.5■□□□□ 0.87
LSM4-206ENST00000600289 SUPT20HQ8NEM7 779 aa20.5■□□□□ 0.87
LSM4-206ENST00000600289 BCL2L13Q9BXK5 485 aa20.5■□□□□ 0.87
LSM4-206ENST00000600289 ZNF277Q9NRM2 450 aaPredicted RBP20.5■□□□□ 0.87
LSM4-206ENST00000600289 TRPM7Q96QT4 1865 aa20.5■□□□□ 0.87
LSM4-206ENST00000600289 GRM8O00222 908 aa20.49■□□□□ 0.87
LSM4-206ENST00000600289 L3MBTL3Q96JM7 780 aaPredicted RBP20.49■□□□□ 0.87
LSM4-206ENST00000600289 UTYO14607 1347 aa20.49■□□□□ 0.87
LSM4-206ENST00000600289 IQCA1LA6NCM1 817 aa20.48■□□□□ 0.87
LSM4-206ENST00000600289 CSF1RP07333 972 aa20.48■□□□□ 0.87
LSM4-206ENST00000600289 SLC4A10Q6U841 1118 aa20.48■□□□□ 0.87
LSM4-206ENST00000600289 SEC31BQ9NQW1 1179 aa20.48■□□□□ 0.87
LSM4-206ENST00000600289 KIF16BQ96L93 1317 aa20.48■□□□□ 0.87
LSM4-206ENST00000600289 DPP8Q6V1X1 898 aaPredicted RBP20.47■□□□□ 0.87
LSM4-206ENST00000600289 MPNDQ8N594 471 aa20.47■□□□□ 0.87
LSM4-206ENST00000600289 CDC5LQ99459 802 aaKnown RBP20.47■□□□□ 0.87
LSM4-206ENST00000600289 GREM2Q9H772 168 aa20.47■□□□□ 0.87
LSM4-206ENST00000600289 PSME4Q14997 1843 aa20.46■□□□□ 0.87
LSM4-206ENST00000600289 FZD9O00144 591 aa20.46■□□□□ 0.87
LSM4-206ENST00000600289 ARHGAP45Q92619 1136 aa20.46■□□□□ 0.87
LSM4-206ENST00000600289 FOXO4P98177 505 aa20.45■□□□□ 0.86
LSM4-206ENST00000600289 ANKRD18AQ8IVF6 992 aa20.45■□□□□ 0.86
LSM4-206ENST00000600289 API5Q9BZZ5 524 aaKnown RBP20.45■□□□□ 0.86
LSM4-206ENST00000600289 PODXL2Q9NZ53 605 aa20.45■□□□□ 0.86
LSM4-206ENST00000600289 C9orf78Q9NZ63 289 aaPredicted RBP20.45■□□□□ 0.86
LSM4-206ENST00000600289 JDP2Q8WYK2 163 aa20.44■□□□□ 0.86
LSM4-206ENST00000600289 CCDC85AQ96PX6 553 aaPredicted RBP20.44■□□□□ 0.86
LSM4-206ENST00000600289 NOB1Q9ULX3 412 aaKnown RBP20.44■□□□□ 0.86
LSM4-206ENST00000600289 KIAA2012Q0VF49 1180 aa20.43■□□□□ 0.86
LSM4-206ENST00000600289 MCOLN1Q9GZU1 580 aa20.43■□□□□ 0.86
LSM4-206ENST00000600289 PPIP5K2O43314 1243 aa20.42■□□□□ 0.86
LSM4-206ENST00000600289 CCT4P50991 539 aaKnown RBP20.42■□□□□ 0.86
LSM4-206ENST00000600289 EAPPQ56P03 285 aaPredicted RBP20.42■□□□□ 0.86
LSM4-206ENST00000600289 LARGE2Q8N3Y3 721 aa20.42■□□□□ 0.86
LSM4-206ENST00000600289 BSDC1Q9NW68 430 aaPredicted RBP20.42■□□□□ 0.86
LSM4-206ENST00000600289 TSKSQ9UJT2 592 aa20.42■□□□□ 0.86
LSM4-206ENST00000600289 ITGA6P23229 1130 aa20.41■□□□□ 0.86
LSM4-206ENST00000600289 GPSM2P81274 684 aa20.41■□□□□ 0.86
LSM4-206ENST00000600289 NSFL1CQ9UNZ2 370 aaKnown RBP20.41■□□□□ 0.86
LSM4-206ENST00000600289 ZNF541Q9H0D2 1346 aa20.41■□□□□ 0.86
LSM4-206ENST00000600289 NBPF7P0C2Y1 421 aaPredicted RBP20.4■□□□□ 0.86
LSM4-206ENST00000600289 XDHP47989 1333 aa20.4■□□□□ 0.86
LSM4-206ENST00000600289 AOC3Q16853 763 aa20.4■□□□□ 0.86
LSM4-206ENST00000600289 MAP1SQ66K74 1059 aaPredicted RBP20.4■□□□□ 0.86
LSM4-206ENST00000600289 NIM1KQ8IY84 436 aa20.4■□□□□ 0.86
LSM4-206ENST00000600289 KAZALD1Q96I82 304 aa20.4■□□□□ 0.86
LSM4-206ENST00000600289 ABT1Q9ULW3 272 aaKnown RBP20.4■□□□□ 0.86
LSM4-206ENST00000600289 ZNF646O15015 1829 aaPredicted RBP20.39■□□□□ 0.86
LSM4-206ENST00000600289 IGHMBP2P38935 993 aaKnown RBP20.39■□□□□ 0.85
LSM4-206ENST00000600289 RABL6Q3YEC7 729 aaPredicted RBP20.39■□□□□ 0.85
LSM4-206ENST00000600289 EPHA10Q5JZY3 1008 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 CNTROBQ8N137 903 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 GPC2Q8N158 579 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 TBC1D16Q8TBP0 767 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 SUCLG2Q96I99 432 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 CAPNS2Q96L46 248 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 EYA3Q99504 573 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 USP44Q9H0E7 712 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 POLLQ9UGP5 575 aa20.39■□□□□ 0.85
LSM4-206ENST00000600289 ANKRD18BA2A2Z9 1011 aa20.38■□□□□ 0.85
LSM4-206ENST00000600289 IPO8O15397 1037 aaKnown RBP20.38■□□□□ 0.85
LSM4-206ENST00000600289 LMBR1LQ6UX01 489 aa20.38■□□□□ 0.85
LSM4-206ENST00000600289 ZNRF3Q9ULT6 936 aa20.38■□□□□ 0.85
LSM4-206ENST00000600289 CLEC11AQ9Y240 323 aa20.38■□□□□ 0.85
LSM4-206ENST00000600289 SCN9AQ15858 1988 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 EPHX2P34913 555 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 EIF6P56537 245 aaKnown RBP20.37■□□□□ 0.85
LSM4-206ENST00000600289 IFIT5Q13325 482 aaKnown RBP20.37■□□□□ 0.85
LSM4-206ENST00000600289 WASHC4Q2M389 1173 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 INTS3Q68E01 1043 aaKnown RBP20.37■□□□□ 0.85
LSM4-206ENST00000600289 BEGAINQ9BUH8 593 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 HACL1Q9UJ83 578 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 GGA1Q9UJY5 639 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 MINPP1Q9UNW1 487 aa20.37■□□□□ 0.85
LSM4-206ENST00000600289 BCAR3O75815 825 aa20.36■□□□□ 0.85
LSM4-206ENST00000600289 CYP4F22Q6NT55 531 aa20.36■□□□□ 0.85
LSM4-206ENST00000600289 ATF7IPQ6VMQ6 1270 aa20.36■□□□□ 0.85
LSM4-206ENST00000600289 ANKIB1Q9P2G1 1089 aa20.36■□□□□ 0.85
LSM4-206ENST00000600289 C6orf229H3BNL8 230 aa20.35■□□□□ 0.85
LSM4-206ENST00000600289 UFL1O94874 794 aa20.35■□□□□ 0.85
LSM4-206ENST00000600289 ATP2B4P23634 1241 aa20.35■□□□□ 0.85
LSM4-206ENST00000600289 GPR101Q96P66 508 aaPredicted RBP20.35■□□□□ 0.85
LSM4-206ENST00000600289 MPHOSPH8Q99549 860 aa20.35■□□□□ 0.85
LSM4-206ENST00000600289 MED23Q9ULK4 1368 aa20.34■□□□□ 0.85
LSM4-206ENST00000600289 TRIM27P14373 513 aa20.34■□□□□ 0.85
LSM4-206ENST00000600289 FMR1Q06787 632 aaKnown RBP eCLIP20.34■□□□□ 0.85
LSM4-206ENST00000600289 CCDC57Q2TAC2 916 aa20.34■□□□□ 0.85
LSM4-206ENST00000600289 ANKRD44Q8N8A2 993 aa20.34■□□□□ 0.85
LSM4-206ENST00000600289 ANKRD2Q9GZV1 360 aa20.34■□□□□ 0.85
LSM4-206ENST00000600289 BICC1Q9H694 974 aaKnown RBP20.34■□□□□ 0.85
LSM4-206ENST00000600289 ECE1P42892 770 aa20.33■□□□□ 0.85
LSM4-206ENST00000600289 LEMD3Q9Y2U8 911 aa20.33■□□□□ 0.85
LSM4-206ENST00000600289 CHMP3Q9Y3E7 222 aa20.33■□□□□ 0.85
LSM4-206ENST00000600289 CXCL9Q07325 125 aa20.32■□□□□ 0.84
LSM4-206ENST00000600289 ZKSCAN2Q63HK3 967 aa20.32■□□□□ 0.84
LSM4-206ENST00000600289 PNMA8AQ86V59 439 aaPredicted RBP20.32■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms