RNA–Protein interactions for RNA: ENST00000588857.5

ATG4D-209, Transcript of autophagy related 4D cysteine peptidase, humanhuman

TSL 1 (best)

Gene ATG4D, Length 1,555 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4D-209ENST00000588857 CCDC8Q9H0W5 538 aaPredicted RBP27.29■■□□□ 1.96
ATG4D-209ENST00000588857 RIPOR2Q9Y4F9 1068 aa27.29■■□□□ 1.96
ATG4D-209ENST00000588857 TAF1P21675 1872 aa27.29■■□□□ 1.96
ATG4D-209ENST00000588857 BACH2Q9BYV9 841 aa27.28■■□□□ 1.96
ATG4D-209ENST00000588857 TTC41PQ6P2S7 1318 aa27.28■■□□□ 1.96
ATG4D-209ENST00000588857 MMP10P09238 476 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 METTL24Q5JXM2 366 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 TSHZ3Q63HK5 1081 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 AKAP2Q9Y2D5 859 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 PARP3Q9Y6F1 533 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 NRXN2Q9P2S2 1712 aa27.27■■□□□ 1.96
ATG4D-209ENST00000588857 GSPT1P15170 499 aaKnown RBP27.26■■□□□ 1.96
ATG4D-209ENST00000588857 C8orf34Q49A92 452 aa27.26■■□□□ 1.96
ATG4D-209ENST00000588857 ANKRD18AQ8IVF6 992 aa27.26■■□□□ 1.96
ATG4D-209ENST00000588857 ECHDC1Q9NTX5 307 aa27.26■■□□□ 1.96
ATG4D-209ENST00000588857 CD2APQ9Y5K6 639 aa27.26■■□□□ 1.95
ATG4D-209ENST00000588857 MROH5Q6ZUA9 1318 aa27.26■■□□□ 1.95
ATG4D-209ENST00000588857 ERC2O15083 957 aa27.25■■□□□ 1.95
ATG4D-209ENST00000588857 DDX46Q7L014 1031 aaKnown RBP27.25■■□□□ 1.95
ATG4D-209ENST00000588857 NLGN2Q8NFZ4 835 aa27.24■■□□□ 1.95
ATG4D-209ENST00000588857 NEUROD6Q96NK8 337 aa27.24■■□□□ 1.95
ATG4D-209ENST00000588857 TSHZ2Q9NRE2 1034 aa27.24■■□□□ 1.95
ATG4D-209ENST00000588857 AK9Q5TCS8 1911 aa27.23■■□□□ 1.95
ATG4D-209ENST00000588857 TLR7Q9NYK1 1049 aaKnown RBP27.23■■□□□ 1.95
ATG4D-209ENST00000588857 ZNF609O15014 1411 aa27.23■■□□□ 1.95
ATG4D-209ENST00000588857 GLRX3O76003 335 aaKnown RBP27.22■■□□□ 1.95
ATG4D-209ENST00000588857 PI4K2BQ8TCG2 481 aa27.22■■□□□ 1.95
ATG4D-209ENST00000588857 DBNLQ9UJU6 430 aaKnown RBP27.22■■□□□ 1.95
ATG4D-209ENST00000588857 A0A1B0GUL7 405 aa27.21■■□□□ 1.95
ATG4D-209ENST00000588857 TIMM10P62072 90 aa27.21■■□□□ 1.95
ATG4D-209ENST00000588857 RPGRQ92834 1020 aaKnown RBP27.21■■□□□ 1.95
ATG4D-209ENST00000588857 ANKRD31Q8N7Z5 1873 aa27.2■■□□□ 1.95
ATG4D-209ENST00000588857 PDE8BO95263 885 aa27.2■■□□□ 1.94
ATG4D-209ENST00000588857 SDSP20132 328 aa27.2■■□□□ 1.94
ATG4D-209ENST00000588857 RPS8P62241 208 aaKnown RBP27.2■■□□□ 1.94
ATG4D-209ENST00000588857 DBNDD2Q9BQY9 259 aa27.2■■□□□ 1.94
ATG4D-209ENST00000588857 BSDC1Q9NW68 430 aaPredicted RBP27.2■■□□□ 1.94
ATG4D-209ENST00000588857 COL4A1P02462 1669 aa27.2■■□□□ 1.94
ATG4D-209ENST00000588857 ATP2B3Q16720 1220 aa27.19■■□□□ 1.94
ATG4D-209ENST00000588857 CELF1Q92879 486 aaKnown RBP27.19■■□□□ 1.94
ATG4D-209ENST00000588857 BRIP1Q9BX63 1249 aa27.19■■□□□ 1.94
ATG4D-209ENST00000588857 TRIM6-TRIM34B2RNG4 842 aa27.18■■□□□ 1.94
ATG4D-209ENST00000588857 CRY2Q49AN0 593 aa27.18■■□□□ 1.94
ATG4D-209ENST00000588857 VGLL2Q8N8G2 317 aa27.18■■□□□ 1.94
ATG4D-209ENST00000588857 CDC45O75419 566 aa27.17■■□□□ 1.94
ATG4D-209ENST00000588857 PUM3Q15397 648 aaKnown RBP27.17■■□□□ 1.94
ATG4D-209ENST00000588857 HELBQ8NG08 1087 aaPredicted RBP27.17■■□□□ 1.94
ATG4D-209ENST00000588857 A0A1B0GUL6 1792 aa27.17■■□□□ 1.94
ATG4D-209ENST00000588857 CHRNDQ07001 517 aa27.16■■□□□ 1.94
ATG4D-209ENST00000588857 GRAPQ13588 217 aa27.16■■□□□ 1.94
ATG4D-209ENST00000588857 GORABQ5T7V8 394 aa27.16■■□□□ 1.94
ATG4D-209ENST00000588857 GRAPLQ8TC17 118 aaPredicted RBP27.16■■□□□ 1.94
ATG4D-209ENST00000588857 RILPL2Q969X0 211 aa27.16■■□□□ 1.94
ATG4D-209ENST00000588857 RBM17Q96I25 401 aaKnown RBP27.16■■□□□ 1.94
ATG4D-209ENST00000588857 KLRG2A4D1S0 409 aaPredicted RBP27.14■■□□□ 1.94
ATG4D-209ENST00000588857 ATP5JP18859 108 aa27.14■■□□□ 1.94
ATG4D-209ENST00000588857 PDE6BP35913 854 aa27.14■■□□□ 1.94
ATG4D-209ENST00000588857 GPR162Q16538 588 aa27.14■■□□□ 1.94
ATG4D-209ENST00000588857 XAGE2Q96GT9 111 aa27.14■■□□□ 1.94
ATG4D-209ENST00000588857 UTRNP46939 3433 aa27.14■■□□□ 1.93
ATG4D-209ENST00000588857 TAF5LO75529 589 aa27.14■■□□□ 1.93
ATG4D-209ENST00000588857 CASC1Q6TDU7 716 aa27.14■■□□□ 1.93
ATG4D-209ENST00000588857 LPIN2Q92539 896 aa27.14■■□□□ 1.93
ATG4D-209ENST00000588857 MINPP1Q9UNW1 487 aa27.14■■□□□ 1.93
ATG4D-209ENST00000588857 ARAP2Q8WZ64 1704 aa27.13■■□□□ 1.93
ATG4D-209ENST00000588857 MAP4K4O95819 1239 aaPredicted RBP27.13■■□□□ 1.93
ATG4D-209ENST00000588857 CCDC158Q5M9N0 1113 aa27.13■■□□□ 1.93
ATG4D-209ENST00000588857 CNTROBQ8N137 903 aa27.13■■□□□ 1.93
ATG4D-209ENST00000588857 SLC5A1P13866 664 aa27.12■■□□□ 1.93
ATG4D-209ENST00000588857 HOXA10P31260 410 aaPredicted RBP27.12■■□□□ 1.93
ATG4D-209ENST00000588857 TBC1D9Q6ZT07 1266 aa27.12■■□□□ 1.93
ATG4D-209ENST00000588857 BOLA2Q9H3K6 86 aa27.12■■□□□ 1.93
ATG4D-209ENST00000588857 ADORA1P30542 326 aa27.11■■□□□ 1.93
ATG4D-209ENST00000588857 ANKRD2Q9GZV1 360 aa27.11■■□□□ 1.93
ATG4D-209ENST00000588857 FGFR2P21802 821 aa27.1■■□□□ 1.93
ATG4D-209ENST00000588857 CRAMP1Q96RY5 1269 aa27.1■■□□□ 1.93
ATG4D-209ENST00000588857 IFIT1P09914 478 aaKnown RBP27.09■■□□□ 1.93
ATG4D-209ENST00000588857 TTC39AQ5SRH9 613 aa27.09■■□□□ 1.93
ATG4D-209ENST00000588857 TGFB2P61812 414 aa27.09■■□□□ 1.93
ATG4D-209ENST00000588857 EVI5LQ96CN4 794 aa27.09■■□□□ 1.93
ATG4D-209ENST00000588857 BBOX1O75936 387 aa27.08■■□□□ 1.93
ATG4D-209ENST00000588857 SRGNP10124 158 aa27.08■■□□□ 1.93
ATG4D-209ENST00000588857 EIF5BO60841 1220 aaKnown RBP27.07■■□□□ 1.92
ATG4D-209ENST00000588857 NPR1P16066 1061 aa27.07■■□□□ 1.92
ATG4D-209ENST00000588857 COL11A2P13942 1736 aaPredicted RBP27.07■■□□□ 1.92
ATG4D-209ENST00000588857 C10orf71Q711Q0 1435 aa27.07■■□□□ 1.92
ATG4D-209ENST00000588857 GOLGB1Q14789 3259 aaKnown RBP27.06■■□□□ 1.92
ATG4D-209ENST00000588857 SEC24BO95487 1268 aa27.06■■□□□ 1.92
ATG4D-209ENST00000588857 YBX3P16989 372 aaKnown RBP eCLIP27.06■■□□□ 1.92
ATG4D-209ENST00000588857 UBE4AQ14139 1066 aa27.06■■□□□ 1.92
ATG4D-209ENST00000588857 PPIL4Q8WUA2 492 aaKnown RBP eCLIP27.06■■□□□ 1.92
ATG4D-209ENST00000588857 HAUS7Q99871 368 aa27.06■■□□□ 1.92
ATG4D-209ENST00000588857 KCNJ4P48050 445 aa27.05■■□□□ 1.92
ATG4D-209ENST00000588857 DNAJC2Q99543 621 aaKnown RBP27.05■■□□□ 1.92
ATG4D-209ENST00000588857 UPF2Q9HAU5 1272 aaKnown RBP27.05■■□□□ 1.92
ATG4D-209ENST00000588857 TMC4Q7Z404 712 aa27.05■■□□□ 1.92
ATG4D-209ENST00000588857 MASTLQ96GX5 879 aa27.05■■□□□ 1.92
ATG4D-209ENST00000588857 RBM19Q9Y4C8 960 aaKnown RBP27.05■■□□□ 1.92
ATG4D-209ENST00000588857 H0YIN7 160 aa27.04■■□□□ 1.92
ATG4D-209ENST00000588857 SNAP23O00161 211 aa27.04■■□□□ 1.92
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms