RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 TMX4Q9H1E5 349 aaPredicted RBP8.72□□□□□ -1.01
VPS53-213ENST00000572334 NSFL1CQ9UNZ2 370 aaKnown RBP8.72□□□□□ -1.01
VPS53-213ENST00000572334 RIMBP2O15034 1052 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 ECE2O60344 883 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 AOC2O75106 756 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 CELF2O95319 508 aaKnown RBP8.71□□□□□ -1.02
VPS53-213ENST00000572334 PCCAP05165 728 aaPredicted RBP8.71□□□□□ -1.02
VPS53-213ENST00000572334 IGKV5-2P06315 115 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 DOK7Q18PE1 504 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 SAMD7Q7Z3H4 446 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 RIC3Q7Z5B4 369 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 CCDC191Q8NCU4 936 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 CNKSR2Q8WXI2 1034 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 DPF2Q92785 391 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 METTL22Q9BUU2 404 aaPredicted RBP8.71□□□□□ -1.02
VPS53-213ENST00000572334 BCL2L13Q9BXK5 485 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 PODXL2Q9NZ53 605 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 AKAP11Q9UKA4 1901 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 ZNF609O15014 1411 aa8.71□□□□□ -1.02
VPS53-213ENST00000572334 C6orf229H3BNL8 230 aa8.7□□□□□ -1.02
VPS53-213ENST00000572334 VIL1P09327 827 aaKnown RBP8.7□□□□□ -1.02
VPS53-213ENST00000572334 MAP2K1Q02750 393 aaPredicted RBP8.7□□□□□ -1.02
VPS53-213ENST00000572334 GOLGA2Q08379 1002 aa8.7□□□□□ -1.02
VPS53-213ENST00000572334 G2E3Q7L622 706 aa8.7□□□□□ -1.02
VPS53-213ENST00000572334 TSR2Q969E8 191 aaKnown RBP8.7□□□□□ -1.02
VPS53-213ENST00000572334 AIDAQ96BJ3 306 aa8.7□□□□□ -1.02
VPS53-213ENST00000572334 ZIC5Q96T25 663 aa8.7□□□□□ -1.02
VPS53-213ENST00000572334 H7C1D1 291 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 PDE8AO60658 829 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 CCDC27Q2M243 656 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 TBC1D10BQ4KMP7 808 aaPredicted RBP8.69□□□□□ -1.02
VPS53-213ENST00000572334 CDC37L1Q7L3B6 337 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 USP48Q86UV5 1035 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 WWC1Q8IX03 1113 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 HHIPL1Q96JK4 782 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 CCDC85AQ96PX6 553 aaPredicted RBP8.69□□□□□ -1.02
VPS53-213ENST00000572334 GMLQ99445 158 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 CWC25Q9NXE8 425 aaPredicted RBP8.69□□□□□ -1.02
VPS53-213ENST00000572334 MAP3K2Q9Y2U5 619 aa8.69□□□□□ -1.02
VPS53-213ENST00000572334 ASTN2O75129 1339 aaPredicted RBP8.69□□□□□ -1.02
VPS53-213ENST00000572334 PI4KAP2A4QPH2 592 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 FAM155AB1AL88 458 aaPredicted RBP8.68□□□□□ -1.02
VPS53-213ENST00000572334 UFL1O94874 794 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 RPS12P25398 132 aaKnown RBP8.68□□□□□ -1.02
VPS53-213ENST00000572334 MAP2K2P36507 400 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 ECE1P42892 770 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 CALD1Q05682 793 aaKnown RBP8.68□□□□□ -1.02
VPS53-213ENST00000572334 GRM1Q13255 1194 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 CCDC152Q4G0S7 254 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 CCDC30Q5VVM6 783 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 KSR2Q6VAB6 950 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 PI4KAP1Q8N8J0 262 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 TTLL11Q8NHH1 800 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 EYA3Q99504 573 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 TSKSQ9UJT2 592 aa8.68□□□□□ -1.02
VPS53-213ENST00000572334 NEURL1BA8MQ27 555 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 ADM5C9JUS6 153 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 CASP7P55210 303 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 CTSWP56202 376 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 ZNF280AP59817 542 aaPredicted RBP8.67□□□□□ -1.02
VPS53-213ENST00000572334 CWF19L2Q2TBE0 894 aaKnown RBP8.67□□□□□ -1.02
VPS53-213ENST00000572334 PAXIP1Q6ZW49 1069 aaPredicted RBP8.67□□□□□ -1.02
VPS53-213ENST00000572334 GREM2Q9H772 168 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 ZNF408Q9H9D4 720 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 GGA1Q9UJY5 639 aa8.67□□□□□ -1.02
VPS53-213ENST00000572334 ECM29Q5VYK3 1845 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 XDHP47989 1333 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 IL16Q14005 1332 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 H7C1W4 665 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 DDX58O95786 925 aaKnown RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 CENPBP07199 599 aaPredicted RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 BRPF1P55201 1214 aaPredicted RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 KIF4BQ2VIQ3 1234 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 TWISTNBQ3B726 338 aaPredicted RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 RBM26Q5T8P6 1007 aaKnown RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 RSBN1LQ6PCB5 846 aaPredicted RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 KRT26Q7Z3Y9 468 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 TXNRD3Q86VQ6 643 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 ABHD8Q96I13 439 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 ZC3H12CQ9C0D7 883 aaKnown RBP8.66□□□□□ -1.02
VPS53-213ENST00000572334 ANKIB1Q9P2G1 1089 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 MINPP1Q9UNW1 487 aa8.66□□□□□ -1.02
VPS53-213ENST00000572334 MED23Q9ULK4 1368 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 IRS2Q9Y4H2 1338 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 SLC4A2P04920 1241 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 KLRK1P26718 216 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 HUNKP57058 714 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 NCBP3Q53F19 620 aaKnown RBP8.65□□□□□ -1.02
VPS53-213ENST00000572334 ANKRD18AQ8IVF6 992 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 AGBL3Q8NEM8 1001 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 MXD3Q9BW11 206 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 PLA2G12BQ9BX93 195 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 SPINK5Q9NQ38 1064 aaPredicted RBP8.65□□□□□ -1.02
VPS53-213ENST00000572334 BSDC1Q9NW68 430 aaPredicted RBP8.65□□□□□ -1.02
VPS53-213ENST00000572334 GGA3Q9NZ52 723 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 PAPPA2Q9BXP8 1791 aa8.65□□□□□ -1.02
VPS53-213ENST00000572334 LAMB1P07942 1786 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 FANCIQ9NVI1 1328 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 VAMP4O75379 141 aa8.64□□□□□ -1.03
VPS53-213ENST00000572334 CSF1RP07333 972 aa8.64□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms