RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 IFIT1P09914 478 aaKnown RBP13.2□□□□□ -0.3
CLN3-238ENST00000569430 SYKP43405 635 aa13.2□□□□□ -0.3
CLN3-238ENST00000569430 CAMSAP1Q5T5Y3 1602 aa13.2□□□□□ -0.3
CLN3-238ENST00000569430 A0A0D9SFI3 127 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 EPB41L2O43491 1005 aaKnown RBP13.19□□□□□ -0.3
CLN3-238ENST00000569430 IMMTQ16891 758 aaKnown RBP13.19□□□□□ -0.3
CLN3-238ENST00000569430 XPO4Q9C0E2 1151 aaKnown RBP13.19□□□□□ -0.3
CLN3-238ENST00000569430 IL25Q9H293 177 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 HECW2Q9P2P5 1572 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 KIAA0232Q92628 1395 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 A0A087WZG4 1122 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 CCDC158Q5M9N0 1113 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 C11orf57Q6ZUT1 292 aaPredicted RBP13.19□□□□□ -0.3
CLN3-238ENST00000569430 NEK11Q8NG66 645 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 FAM135BQ49AJ0 1406 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 SPTLC2O15270 562 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 KRBA2Q6ZNG9 492 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 RUFY1Q96T51 708 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 AOX1Q06278 1338 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 SSH2Q76I76 1423 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 NRXN1Q9ULB1 1477 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 ARAP3Q8WWN8 1544 aa13.19□□□□□ -0.3
CLN3-238ENST00000569430 KLF18A0A0U1RQI7 1052 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 KIF5CO60282 957 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 SETQ01105 290 aaPredicted RBP13.18□□□□□ -0.3
CLN3-238ENST00000569430 PTPN21Q16825 1174 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 NUP133Q8WUM0 1156 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 SMARCE1Q969G3 411 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 TM6SF1Q9BZW5 370 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 BICC1Q9H694 974 aaKnown RBP13.18□□□□□ -0.3
CLN3-238ENST00000569430 CEP126Q9P2H0 1117 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 PUF60Q9UHX1 559 aaKnown RBP13.18□□□□□ -0.3
CLN3-238ENST00000569430 ERICH2A1L162 156 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 TXLNBQ8N3L3 684 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 IQSEC2Q5JU85 1478 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 NAP1L1P55209 391 aaKnown RBP13.18□□□□□ -0.3
CLN3-238ENST00000569430 MCMDC2Q4G0Z9 681 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 FBXO38Q6PIJ6 1188 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 TMEM87AQ8NBN3 555 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 USP28Q96RU2 1077 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 TSPYL1Q9H0U9 437 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 LZTFL1Q9NQ48 299 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 CTNNA3Q9UI47 895 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 SIGLEC1Q9BZZ2 1709 aa13.18□□□□□ -0.3
CLN3-238ENST00000569430 SLC39A6Q13433 755 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 CCDC144BQ3MJ40 725 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 LGR6Q9HBX8 967 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 PRR36Q9H6K5 1346 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 KSR2Q6VAB6 950 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 MICU3Q86XE3 530 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 TDRD7Q8NHU6 1098 aaKnown RBP13.17□□□□□ -0.3
CLN3-238ENST00000569430 USP27XA6NNY8 438 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 CAPN2P17655 700 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 EAF2Q96CJ1 260 aaPredicted RBP13.17□□□□□ -0.3
CLN3-238ENST00000569430 RAI14Q9P0K7 980 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 RSPH14Q9UHP6 348 aa13.17□□□□□ -0.3
CLN3-238ENST00000569430 IDH1O75874 414 aaKnown RBP13.16□□□□□ -0.3
CLN3-238ENST00000569430 SEC62Q99442 399 aaKnown RBP13.16□□□□□ -0.3
CLN3-238ENST00000569430 DHX32Q7L7V1 743 aaKnown RBP13.16□□□□□ -0.3
CLN3-238ENST00000569430 IL17REQ8NFR9 667 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 KCNG4Q8TDN1 519 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 VPS18Q9P253 973 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 DDX41Q9UJV9 622 aaKnown RBP13.16□□□□□ -0.3
CLN3-238ENST00000569430 AMOTL2Q9Y2J4 779 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 NEXMIFQ5QGS0 1516 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 KCNQ3O43525 872 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 LTKP29376 864 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 HSP90AB3PQ58FF7 597 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 CCDC102BQ68D86 513 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 MTMR7Q9Y216 660 aa13.16□□□□□ -0.3
CLN3-238ENST00000569430 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.16□□□□□ -0.3
CLN3-238ENST00000569430 EDC4Q6P2E9 1401 aaKnown RBP13.16□□□□□ -0.3
CLN3-238ENST00000569430 RXRAP19793 462 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 TERF2Q15554 542 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 DACH1Q9UI36 760 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 ZC3H6P61129 1189 aaKnown RBP13.15□□□□□ -0.3
CLN3-238ENST00000569430 FANCCQ00597 558 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 COPS6Q7L5N1 327 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 PI4K2BQ8TCG2 481 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 ST7Q9NRC1 585 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 SHPRHQ149N8 1683 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 IBSPP21815 317 aaPredicted RBP13.15□□□□□ -0.3
CLN3-238ENST00000569430 TFCP2Q12800 502 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 LINS1Q8NG48 757 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 LRRC59Q96AG4 307 aaKnown RBP13.15□□□□□ -0.3
CLN3-238ENST00000569430 DEF6Q9H4E7 631 aa13.15□□□□□ -0.3
CLN3-238ENST00000569430 AP5Z1O43299 807 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 RHOXF2BP0C7M4 288 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 KMT5BQ4FZB7 885 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 TRIM22Q8IYM9 498 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 XAGE3Q8WTP9 111 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 RHOXF2Q9BQY4 288 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 ZNF213O14771 459 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 ALDH1L1O75891 902 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 MRFAP1L1Q96HT8 127 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 TTC14Q96N46 770 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 PTPRMP28827 1452 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 SEC31AO94979 1220 aaKnown RBP13.14□□□□□ -0.31
CLN3-238ENST00000569430 CCDC57Q2TAC2 916 aa13.14□□□□□ -0.31
CLN3-238ENST00000569430 OAS2P29728 719 aaKnown RBP13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms