RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 TTC41PQ6P2S7 1318 aa37.49■■■■□ 3.59
CTCF-203ENST00000566078 DDX46Q7L014 1031 aaKnown RBP37.48■■■■□ 3.59
CTCF-203ENST00000566078 MROH5Q6ZUA9 1318 aa37.48■■■■□ 3.59
CTCF-203ENST00000566078 C8orf34Q49A92 452 aa37.47■■■■□ 3.59
CTCF-203ENST00000566078 CELF1Q92879 486 aaKnown RBP37.47■■■■□ 3.59
CTCF-203ENST00000566078 ECHDC1Q9NTX5 307 aa37.46■■■■□ 3.59
CTCF-203ENST00000566078 DBNLQ9UJU6 430 aaKnown RBP37.46■■■■□ 3.59
CTCF-203ENST00000566078 CACNA1SQ13698 1873 aa37.45■■■■□ 3.59
CTCF-203ENST00000566078 PI4K2BQ8TCG2 481 aa37.45■■■■□ 3.59
CTCF-203ENST00000566078 AKAP2Q9Y2D5 859 aa37.45■■■■□ 3.59
CTCF-203ENST00000566078 CRY2Q49AN0 593 aa37.44■■■■□ 3.58
CTCF-203ENST00000566078 VGLL2Q8N8G2 317 aa37.44■■■■□ 3.58
CTCF-203ENST00000566078 RPGRQ92834 1020 aaKnown RBP37.44■■■■□ 3.58
CTCF-203ENST00000566078 BACH2Q9BYV9 841 aa37.44■■■■□ 3.58
CTCF-203ENST00000566078 NEUROD6Q96NK8 337 aa37.43■■■■□ 3.58
CTCF-203ENST00000566078 DBNDD2Q9BQY9 259 aa37.43■■■■□ 3.58
CTCF-203ENST00000566078 A0A1B0GUL7 405 aa37.43■■■■□ 3.58
CTCF-203ENST00000566078 SLC16A10Q8TF71 515 aa37.42■■■■□ 3.58
CTCF-203ENST00000566078 BSDC1Q9NW68 430 aaPredicted RBP37.42■■■■□ 3.58
CTCF-203ENST00000566078 ERC2O15083 957 aa37.41■■■■□ 3.58
CTCF-203ENST00000566078 TIMM10P62072 90 aa37.41■■■■□ 3.58
CTCF-203ENST00000566078 BRIP1Q9BX63 1249 aa37.41■■■■□ 3.58
CTCF-203ENST00000566078 PDE8BO95263 885 aa37.4■■■■□ 3.58
CTCF-203ENST00000566078 RPS8P62241 208 aaKnown RBP37.4■■■■□ 3.58
CTCF-203ENST00000566078 ATP2B3Q16720 1220 aa37.4■■■■□ 3.58
CTCF-203ENST00000566078 GLRX3O76003 335 aaKnown RBP37.39■■■■□ 3.58
CTCF-203ENST00000566078 HELBQ8NG08 1087 aaPredicted RBP37.39■■■■□ 3.58
CTCF-203ENST00000566078 SDSP20132 328 aa37.39■■■■□ 3.58
CTCF-203ENST00000566078 GRAPQ13588 217 aa37.39■■■■□ 3.58
CTCF-203ENST00000566078 GRAPLQ8TC17 118 aaPredicted RBP37.39■■■■□ 3.58
CTCF-203ENST00000566078 KLRG2A4D1S0 409 aaPredicted RBP37.38■■■■□ 3.57
CTCF-203ENST00000566078 CHRNDQ07001 517 aa37.38■■■■□ 3.57
CTCF-203ENST00000566078 TSHZ2Q9NRE2 1034 aa37.38■■■■□ 3.57
CTCF-203ENST00000566078 RBM17Q96I25 401 aaKnown RBP37.37■■■■□ 3.57
CTCF-203ENST00000566078 TAF5LO75529 589 aa37.36■■■■□ 3.57
CTCF-203ENST00000566078 PUM3Q15397 648 aaKnown RBP37.36■■■■□ 3.57
CTCF-203ENST00000566078 LRRC37AA6NMS7 1700 aa37.35■■■■□ 3.57
CTCF-203ENST00000566078 TRIM6-TRIM34B2RNG4 842 aa37.35■■■■□ 3.57
CTCF-203ENST00000566078 PDE6BP35913 854 aa37.35■■■■□ 3.57
CTCF-203ENST00000566078 XAGE2Q96GT9 111 aa37.34■■■■□ 3.57
CTCF-203ENST00000566078 ADORA1P30542 326 aa37.33■■■■□ 3.57
CTCF-203ENST00000566078 MINPP1Q9UNW1 487 aa37.33■■■■□ 3.57
CTCF-203ENST00000566078 MAP4K4O95819 1239 aaPredicted RBP37.32■■■■□ 3.57
CTCF-203ENST00000566078 HOXA10P31260 410 aaPredicted RBP37.32■■■■□ 3.57
CTCF-203ENST00000566078 R3HDM1Q15032 1099 aaKnown RBP37.32■■■■□ 3.56
CTCF-203ENST00000566078 RILPL2Q969X0 211 aa37.32■■■■□ 3.56
CTCF-203ENST00000566078 KIF13BQ9NQT8 1826 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 DLEC1Q9Y238 1755 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 CDC45O75419 566 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 ATP5JP18859 108 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 FGFR2P21802 821 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 LPIN2Q92539 896 aa37.31■■■■□ 3.56
CTCF-203ENST00000566078 GORABQ5T7V8 394 aa37.3■■■■□ 3.56
CTCF-203ENST00000566078 CRAMP1Q96RY5 1269 aa37.3■■■■□ 3.56
CTCF-203ENST00000566078 SLC5A1P13866 664 aa37.29■■■■□ 3.56
CTCF-203ENST00000566078 BOLA2Q9H3K6 86 aa37.29■■■■□ 3.56
CTCF-203ENST00000566078 AKAP11Q9UKA4 1901 aa37.29■■■■□ 3.56
CTCF-203ENST00000566078 ZBTB7AO95365 584 aa37.28■■■■□ 3.56
CTCF-203ENST00000566078 SRGNP10124 158 aa37.28■■■■□ 3.56
CTCF-203ENST00000566078 C10orf71Q711Q0 1435 aa37.27■■■■□ 3.56
CTCF-203ENST00000566078 NPR1P16066 1061 aa37.27■■■■□ 3.56
CTCF-203ENST00000566078 CNTROBQ8N137 903 aa37.27■■■■□ 3.56
CTCF-203ENST00000566078 MYH13Q9UKX3 1938 aa37.27■■■■□ 3.56
CTCF-203ENST00000566078 SNAP23O00161 211 aa37.26■■■■□ 3.56
CTCF-203ENST00000566078 CCDC158Q5M9N0 1113 aa37.26■■■■□ 3.56
CTCF-203ENST00000566078 TBC1D9Q6ZT07 1266 aa37.26■■■■□ 3.56
CTCF-203ENST00000566078 ANKRD2Q9GZV1 360 aa37.26■■■■□ 3.56
CTCF-203ENST00000566078 TTC39AQ5SRH9 613 aa37.25■■■■□ 3.55
CTCF-203ENST00000566078 IFIT1P09914 478 aaKnown RBP37.25■■■■□ 3.55
CTCF-203ENST00000566078 C2CD5Q86YS7 1000 aa37.24■■■■□ 3.55
CTCF-203ENST00000566078 MASTLQ96GX5 879 aa37.23■■■■□ 3.55
CTCF-203ENST00000566078 MTFR1LQ9H019 292 aa37.23■■■■□ 3.55
CTCF-203ENST00000566078 BBOX1O75936 387 aa37.22■■■■□ 3.55
CTCF-203ENST00000566078 ILDR2Q71H61 639 aa37.22■■■■□ 3.55
CTCF-203ENST00000566078 LTBP1Q14766 1721 aa37.22■■■■□ 3.55
CTCF-203ENST00000566078 MYH7P12883 1935 aa37.22■■■■□ 3.55
CTCF-203ENST00000566078 UBE4AQ14139 1066 aa37.21■■■■□ 3.55
CTCF-203ENST00000566078 SLC51AQ86UW1 340 aa37.21■■■■□ 3.55
CTCF-203ENST00000566078 HAUS7Q99871 368 aa37.21■■■■□ 3.55
CTCF-203ENST00000566078 SEC24BO95487 1268 aa37.21■■■■□ 3.55
CTCF-203ENST00000566078 PPIL4Q8WUA2 492 aaKnown RBP eCLIP37.21■■■■□ 3.55
CTCF-203ENST00000566078 DNAJC2Q99543 621 aaKnown RBP37.21■■■■□ 3.55
CTCF-203ENST00000566078 PSDA5PKW4 1024 aaPredicted RBP37.2■■■■□ 3.55
CTCF-203ENST00000566078 H0YIN7 160 aa37.2■■■■□ 3.55
CTCF-203ENST00000566078 CASC1Q6TDU7 716 aa37.2■■■■□ 3.55
CTCF-203ENST00000566078 EVI5LQ96CN4 794 aa37.2■■■■□ 3.55
CTCF-203ENST00000566078 ATF5Q9Y2D1 282 aaPredicted RBP37.2■■■■□ 3.55
CTCF-203ENST00000566078 PPEF1O14829 653 aaPredicted RBP37.19■■■■□ 3.54
CTCF-203ENST00000566078 KCNJ4P48050 445 aa37.19■■■■□ 3.54
CTCF-203ENST00000566078 NDUFB9Q9Y6M9 179 aa37.19■■■■□ 3.54
CTCF-203ENST00000566078 SLX4Q8IY92 1834 aa37.19■■■■□ 3.54
CTCF-203ENST00000566078 ALDH1B1P30837 517 aa37.18■■■■□ 3.54
CTCF-203ENST00000566078 TMC4Q7Z404 712 aa37.18■■■■□ 3.54
CTCF-203ENST00000566078 MYO5AQ9Y4I1 1855 aaKnown RBP37.18■■■■□ 3.54
CTCF-203ENST00000566078 CCDC102BQ68D86 513 aa37.18■■■■□ 3.54
CTCF-203ENST00000566078 ZNF622Q969S3 477 aaKnown RBP eCLIP37.18■■■■□ 3.547e-10■□□□□ 8.5
CTCF-203ENST00000566078 PHKA1P46020 1223 aa37.17■■■■□ 3.54
CTCF-203ENST00000566078 ANKIB1Q9P2G1 1089 aa37.17■■■■□ 3.54
CTCF-203ENST00000566078 XDHP47989 1333 aa37.16■■■■□ 3.54
CTCF-203ENST00000566078 WTIPA6NIX2 430 aaPredicted RBP37.16■■■■□ 3.54
Retrieved 100 of 20,778 RNA–protein pairs in 99.2 ms