RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 USP27XA6NNY8 438 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 MYO1CO00159 1063 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 UBE2HP62256 183 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 POLA2Q14181 598 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 BMS1Q14692 1282 aaKnown RBP15.66■□□□□ 0.1
CLK3-206ENST00000562078 KSR2Q6VAB6 950 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 IL1RAPL2Q9NP60 686 aa15.66■□□□□ 0.1
CLK3-206ENST00000562078 TOGARAM1Q9Y4F4 1720 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 LRP6O75581 1613 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 FIBPO43427 364 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 SURF6O75683 361 aaKnown RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 AIMP1Q12904 312 aaKnown RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 CWF19L2Q2TBE0 894 aaKnown RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 LUZP1Q86V48 1076 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 DDX21Q9NR30 783 aaKnown RBP eCLIP15.65■□□□□ 0.1
CLK3-206ENST00000562078 WDR33Q9C0J8 1336 aaKnown RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 GLI3P10071 1580 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 ARFGEF2Q9Y6D5 1785 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 EXOC5O00471 708 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 POLR3GO15318 223 aaPredicted RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 NKX1-1Q15270 411 aaPredicted RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 SLFNL1Q499Z3 407 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 ERO1AQ96HE7 468 aa15.65■□□□□ 0.1
CLK3-206ENST00000562078 INTS4Q96HW7 963 aaKnown RBP15.65■□□□□ 0.1
CLK3-206ENST00000562078 RPAP1Q9BWH6 1393 aaPredicted RBP15.64■□□□□ 0.09
CLK3-206ENST00000562078 PLA2G4AP47712 749 aa15.64■□□□□ 0.09
CLK3-206ENST00000562078 MEX3CQ5U5Q3 659 aaKnown RBP15.64■□□□□ 0.09
CLK3-206ENST00000562078 ICE2Q659A1 982 aa15.64■□□□□ 0.09
CLK3-206ENST00000562078 ZNF496Q96IT1 587 aaPredicted RBP15.64■□□□□ 0.09
CLK3-206ENST00000562078 KCNG1Q9UIX4 513 aa15.64■□□□□ 0.09
CLK3-206ENST00000562078 THRAP3Q9Y2W1 955 aaKnown RBP15.64■□□□□ 0.09
CLK3-206ENST00000562078 ERVV-2B6SEH9 535 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 ERC2O15083 957 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 CASQ1P31415 396 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 PDIA6Q15084 440 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 MUM1L1Q5H9M0 696 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 UNC5CLQ8IV45 518 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 CACTINQ8WUQ7 758 aaKnown RBP15.63■□□□□ 0.09
CLK3-206ENST00000562078 TOMM22Q9NS69 142 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 C9orf78Q9NZ63 289 aaPredicted RBP15.63■□□□□ 0.09
CLK3-206ENST00000562078 SPATA31A5Q5VU36 1347 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 SPATA31A7Q8IWB4 1347 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 MYL6BP14649 208 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 ST5P78524 1137 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 EP400NLQ6ZTU2 488 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 CDCA7Q9BWT1 371 aaPredicted RBP15.63■□□□□ 0.09
CLK3-206ENST00000562078 PALD1Q9ULE6 856 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 TNS2Q63HR2 1409 aa15.63■□□□□ 0.09
CLK3-206ENST00000562078 ALDH1L1O75891 902 aa15.62■□□□□ 0.09
CLK3-206ENST00000562078 UBR2Q8IWV8 1755 aa15.62■□□□□ 0.09
CLK3-206ENST00000562078 ITGB4P16144 1822 aa15.62■□□□□ 0.09
CLK3-206ENST00000562078 DDX58O95786 925 aaKnown RBP15.62■□□□□ 0.09
CLK3-206ENST00000562078 PNMA6AP0CW24 399 aaPredicted RBP15.62■□□□□ 0.09
CLK3-206ENST00000562078 MCM2P49736 904 aa15.62■□□□□ 0.09
CLK3-206ENST00000562078 CCDC191Q8NCU4 936 aa15.62■□□□□ 0.09
CLK3-206ENST00000562078 RAB11FIP3O75154 756 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 CCDC192P0DO97 292 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 NUTM1Q86Y26 1132 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 TXLNBQ8N3L3 684 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 RHPN1Q8TCX5 695 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 SMARCE1Q969G3 411 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 STAP2Q9UGK3 403 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 CLGNO14967 610 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 H2AFXP16104 143 aaPredicted RBP15.61■□□□□ 0.09
CLK3-206ENST00000562078 CLCN6P51797 869 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 DDB1Q16531 1140 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 ERCC6LQ2NKX8 1250 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 CCDC144BQ3MJ40 725 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 CCDC144CPQ8IYA2 1237 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 FAM200AQ8TCP9 573 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 BCL9LQ86UU0 1499 aa15.61■□□□□ 0.09
CLK3-206ENST00000562078 PIP4K2AP48426 406 aaPredicted RBP15.6■□□□□ 0.09
CLK3-206ENST00000562078 PTPN14Q15678 1187 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 LINS1Q8NG48 757 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 RILPL2Q969X0 211 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 FMNL2Q96PY5 1086 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 UPF3BQ9BZI7 483 aaKnown RBP15.6■□□□□ 0.09
CLK3-206ENST00000562078 TRIM5Q9C035 493 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 ATG3Q9NT62 314 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 TMOD3Q9NYL9 352 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 SLU7O95391 586 aaKnown RBP15.6■□□□□ 0.09
CLK3-206ENST00000562078 RIC3Q7Z5B4 369 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 LRRN4CLQ8ND94 238 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 MYCBPQ99417 103 aaPredicted RBP15.6■□□□□ 0.09
CLK3-206ENST00000562078 USP21Q9UK80 565 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 PAPPAQ13219 1627 aa15.6■□□□□ 0.09
CLK3-206ENST00000562078 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.6■□□□□ 0.09
CLK3-206ENST00000562078 ZSCAN26Q16670 478 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 TEX35Q5T0J7 233 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 XAGE3Q8WTP9 111 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 NCAPGQ9BPX3 1015 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 USP16Q9Y5T5 823 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 DOT1LQ8TEK3 1739 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 AOX1Q06278 1338 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 GRM8O00222 908 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 ZNF75DP51815 510 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 OS9Q13438 667 aaPredicted RBP15.59■□□□□ 0.09
CLK3-206ENST00000562078 MTX1Q13505 466 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 ARID5BQ14865 1188 aa15.59■□□□□ 0.09
CLK3-206ENST00000562078 NYAP1Q6ZVC0 841 aa15.59■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 164 ms