RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 PDE3AQ14432 1141 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 EYA3Q99504 573 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 CHMP4BQ9H444 224 aaKnown RBP16.27■□□□□ 0.2
NEDD8-208ENST00000560427 ANKIB1Q9P2G1 1089 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 GGA1Q9UJY5 639 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 MINPP1Q9UNW1 487 aa16.27■□□□□ 0.2
NEDD8-208ENST00000560427 ATP2B4P23634 1241 aa16.26■□□□□ 0.19
NEDD8-208ENST00000560427 KIAA2012Q0VF49 1180 aa16.26■□□□□ 0.19
NEDD8-208ENST00000560427 MTX1Q13505 466 aa16.26■□□□□ 0.19
NEDD8-208ENST00000560427 SLC51AQ86UW1 340 aa16.26■□□□□ 0.19
NEDD8-208ENST00000560427 JDP2Q8WYK2 163 aa16.26■□□□□ 0.19
NEDD8-208ENST00000560427 SPEF2Q9C093 1822 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 PPIP5K2O43314 1243 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 MVPQ14764 893 aaKnown RBP16.25■□□□□ 0.19
NEDD8-208ENST00000560427 LDHAL6AQ6ZMR3 332 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 LARGE2Q8N3Y3 721 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 TBC1D16Q8TBP0 767 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 FBXO3Q9UK99 471 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 DDX19BQ9UMR2 479 aa16.25■□□□□ 0.19
NEDD8-208ENST00000560427 KDM2BQ8NHM5 1336 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 C6orf229H3BNL8 230 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 ZBTB7BO15156 539 aaPredicted RBP16.24■□□□□ 0.19
NEDD8-208ENST00000560427 UFL1O94874 794 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 NIM1KQ8IY84 436 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 PANK1Q8TE04 598 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 CNNM1Q9NRU3 951 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 POLLQ9UGP5 575 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 LEMD3Q9Y2U8 911 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 MED23Q9ULK4 1368 aa16.24■□□□□ 0.19
NEDD8-208ENST00000560427 MROH5Q6ZUA9 1318 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 FZD9O00144 591 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 RFX5P48382 616 aaPredicted RBP16.23■□□□□ 0.19
NEDD8-208ENST00000560427 CHRNDQ07001 517 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 AOC3Q16853 763 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 WASHC4Q2M389 1173 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 DPY19L2Q6NUT2 758 aa16.23■□□□□ 0.19
NEDD8-208ENST00000560427 ZNF784Q8NCA9 323 aaPredicted RBP16.23■□□□□ 0.19
NEDD8-208ENST00000560427 CCDC88AQ3V6T2 1871 aa16.22■□□□□ 0.19
NEDD8-208ENST00000560427 GLTPD2A6NH11 291 aa16.22■□□□□ 0.19
NEDD8-208ENST00000560427 PLIN1O60240 522 aa16.22■□□□□ 0.19
NEDD8-208ENST00000560427 ZNF594Q96JF6 807 aaPredicted RBP16.22■□□□□ 0.19
NEDD8-208ENST00000560427 ZC3H12CQ9C0D7 883 aaKnown RBP16.22■□□□□ 0.19
NEDD8-208ENST00000560427 COL4A5P29400 1685 aa16.21■□□□□ 0.19
NEDD8-208ENST00000560427 CIAO1O76071 339 aa16.21■□□□□ 0.19
NEDD8-208ENST00000560427 RRP1P56182 461 aaKnown RBP16.21■□□□□ 0.19
NEDD8-208ENST00000560427 EIF6P56537 245 aaKnown RBP16.21■□□□□ 0.19
NEDD8-208ENST00000560427 PTPN12Q05209 780 aaKnown RBP16.21■□□□□ 0.19
NEDD8-208ENST00000560427 ZNRF3Q9ULT6 936 aa16.21■□□□□ 0.19
NEDD8-208ENST00000560427 A0A1B0GUL6 1792 aa16.21■□□□□ 0.18
NEDD8-208ENST00000560427 ZNF804BA4D1E1 1349 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 EYA2O00167 538 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 SRGAP3O43295 1099 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 KCNJ4P48050 445 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 GPBP1L1Q9HC44 474 aaPredicted RBP16.2■□□□□ 0.18
NEDD8-208ENST00000560427 COPRSQ9NQ92 184 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 RIPOR2Q9Y4F9 1068 aa16.2■□□□□ 0.18
NEDD8-208ENST00000560427 C15orf52Q6ZUT6 534 aaKnown RBP16.19■□□□□ 0.18
NEDD8-208ENST00000560427 COG6Q9Y2V7 657 aa16.19■□□□□ 0.18
NEDD8-208ENST00000560427 GPC2Q8N158 579 aa16.18■□□□□ 0.18
NEDD8-208ENST00000560427 WDR90Q96KV7 1748 aa16.18■□□□□ 0.18
NEDD8-208ENST00000560427 ZNF541Q9H0D2 1346 aa16.18■□□□□ 0.18
NEDD8-208ENST00000560427 G3V3G9 751 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 RIMBP2O15034 1052 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 IL15P40933 162 aaPredicted RBP16.17■□□□□ 0.18
NEDD8-208ENST00000560427 UBE4AQ14139 1066 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 LRRC24Q50LG9 513 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 METTL24Q5JXM2 366 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 DCAF8Q5TAQ9 597 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 KLHDC4Q8TBB5 520 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 L3MBTL3Q96JM7 780 aaPredicted RBP16.17■□□□□ 0.18
NEDD8-208ENST00000560427 PUS3Q9BZE2 481 aaKnown RBP16.17■□□□□ 0.18
NEDD8-208ENST00000560427 ZBTB40Q9NUA8 1239 aa16.17■□□□□ 0.18
NEDD8-208ENST00000560427 ECE2O60344 883 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 TAF5LO75529 589 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 PDE8BO95263 885 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 ATP8B2P98198 1209 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 POLA2Q14181 598 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 TNIP1Q15025 636 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 C20orf194Q5TEA3 1177 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 PODNQ7Z5L7 613 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 VGLL2Q8N8G2 317 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 SSH3Q8TE77 659 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 COA1Q9GZY4 146 aa16.16■□□□□ 0.18
NEDD8-208ENST00000560427 PNMA6EA0A0J9YXQ4 647 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 IQCA1LA6NCM1 817 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 ZNF609O15014 1411 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 CIAPIN1Q6FI81 312 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 CEP85Q6P2H3 762 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 RPAP2Q8IXW5 612 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-208ENST00000560427 HELBQ8NG08 1087 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-208ENST00000560427 ZNF526Q8TF50 670 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-208ENST00000560427 GPR101Q96P66 508 aaPredicted RBP16.15■□□□□ 0.18
NEDD8-208ENST00000560427 C1orf115Q9H7X2 142 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 DBNDD1Q9H9R9 158 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 IRS2Q9Y4H2 1338 aa16.15■□□□□ 0.18
NEDD8-208ENST00000560427 DDNO94850 711 aaPredicted RBP16.14■□□□□ 0.17
NEDD8-208ENST00000560427 CXCL9Q07325 125 aa16.14■□□□□ 0.17
NEDD8-208ENST00000560427 PUM3Q15397 648 aaKnown RBP16.14■□□□□ 0.17
NEDD8-208ENST00000560427 ATG9AQ7Z3C6 839 aa16.14■□□□□ 0.17
NEDD8-208ENST00000560427 YDJCA8MPS7 323 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms