RNA–Protein interactions for RNA: ENST00000559771.5

USP3-215, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 4

Gene USP3, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-215ENST00000559771 AKAP4Q5JQC9 854 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 C1orf141Q5JVX7 400 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 DNAJC10Q8IXB1 793 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 KRTAP9-9Q9BYP9 154 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 KRTAP9-4Q9BYQ2 154 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 SLC52A2Q9HAB3 445 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 KNSTRNQ9Y448 316 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 SBF1O95248 1867 aa7.91□□□□□ -1.14
USP3-215ENST00000559771 DLEC1Q9Y238 1755 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 SOS1Q07889 1333 aaPredicted RBP7.9□□□□□ -1.14
USP3-215ENST00000559771 POLRMTO00411 1230 aaKnown RBP7.9□□□□□ -1.14
USP3-215ENST00000559771 RNMTO43148 476 aaKnown RBP7.9□□□□□ -1.14
USP3-215ENST00000559771 HMOX1P09601 288 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 CYP19A1P11511 503 aaPredicted RBP7.9□□□□□ -1.14
USP3-215ENST00000559771 HSPA6P17066 643 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 SLC39A6Q13433 755 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 MTHFSDQ2M296 383 aaKnown RBP7.9□□□□□ -1.14
USP3-215ENST00000559771 LCE3BQ5TA77 95 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 CCDC87Q9NVE4 849 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 BCS1LQ9Y276 419 aa7.9□□□□□ -1.14
USP3-215ENST00000559771 CHRNA5P30532 468 aa7.89□□□□□ -1.15
USP3-215ENST00000559771 CCER1Q8TC90 406 aaPredicted RBP7.89□□□□□ -1.15
USP3-215ENST00000559771 KRTAP4-12Q9BQ66 201 aa7.89□□□□□ -1.15
USP3-215ENST00000559771 PARP3Q9Y6F1 533 aa7.89□□□□□ -1.15
USP3-215ENST00000559771 ANKRD31Q8N7Z5 1873 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 FCHSD2O94868 740 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 PRELPP51888 382 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 USPL1Q5W0Q7 1092 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 ARHGAP27Q6ZUM4 889 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 NMRK2Q9NPI5 230 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 ZBTB1Q9Y2K1 713 aa7.88□□□□□ -1.15
USP3-215ENST00000559771 COL15A1P39059 1388 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 CARMIL3Q8ND23 1372 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 NPC1L1Q9UHC9 1359 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 RCCD1A6NED2 376 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 DIAPH1O60610 1272 aaKnown RBP7.87□□□□□ -1.15
USP3-215ENST00000559771 ZEB1P37275 1124 aaPredicted RBP7.87□□□□□ -1.15
USP3-215ENST00000559771 KRT76Q01546 638 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 NFIXQ14938 502 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 CC2D1BQ5T0F9 858 aaKnown RBP7.87□□□□□ -1.15
USP3-215ENST00000559771 DNAJC5GQ8N7S2 189 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 IL17REQ8NFR9 667 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 ZFP42Q96MM3 310 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 PIM2Q9P1W9 311 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 NARFQ9UHQ1 456 aa7.87□□□□□ -1.15
USP3-215ENST00000559771 SCN7AQ01118 1682 aa7.86□□□□□ -1.15
USP3-215ENST00000559771 RNF225M0QZC1 329 aaPredicted RBP7.86□□□□□ -1.15
USP3-215ENST00000559771 ZBTB24O43167 697 aaPredicted RBP7.86□□□□□ -1.15
USP3-215ENST00000559771 TOMM70O94826 608 aa7.86□□□□□ -1.15
USP3-215ENST00000559771 C9orf131Q5VYM1 1079 aa7.86□□□□□ -1.15
USP3-215ENST00000559771 VSIG10Q8N0Z9 540 aa7.86□□□□□ -1.15
USP3-215ENST00000559771 COL11A2P13942 1736 aaPredicted RBP7.86□□□□□ -1.15
USP3-215ENST00000559771 WDR90Q96KV7 1748 aa7.86□□□□□ -1.15
USP3-215ENST00000559771 EIF5P55010 431 aaKnown RBP7.85□□□□□ -1.15
USP3-215ENST00000559771 SKOR1P84550 965 aa7.85□□□□□ -1.15
USP3-215ENST00000559771 DALRD3Q5D0E6 543 aaKnown RBP7.85□□□□□ -1.15
USP3-215ENST00000559771 MORN1Q5T089 497 aa7.85□□□□□ -1.15
USP3-215ENST00000559771 ZNF496Q96IT1 587 aaPredicted RBP7.85□□□□□ -1.15
USP3-215ENST00000559771 PHACTR3Q96KR7 559 aa7.85□□□□□ -1.15
USP3-215ENST00000559771 ADGRG1Q9Y653 693 aa7.85□□□□□ -1.15
USP3-215ENST00000559771 TNRC6CQ9HCJ0 1690 aaKnown RBP7.85□□□□□ -1.15
USP3-215ENST00000559771 CCDC88AQ3V6T2 1871 aa7.85□□□□□ -1.15
USP3-215ENST00000559771 CEMIPQ8WUJ3 1361 aa7.84□□□□□ -1.15
USP3-215ENST00000559771 BCORQ6W2J9 1755 aa7.84□□□□□ -1.15
USP3-215ENST00000559771 TIAM2Q8IVF5 1701 aa7.84□□□□□ -1.15
USP3-215ENST00000559771 KCNQ3O43525 872 aa7.84□□□□□ -1.15
USP3-215ENST00000559771 CANXP27824 592 aaKnown RBP7.84□□□□□ -1.15
USP3-215ENST00000559771 HEG1Q9ULI3 1381 aa7.84□□□□□ -1.16
USP3-215ENST00000559771 SOBPA7XYQ1 873 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 CAPN5O15484 640 aaPredicted RBP7.83□□□□□ -1.16
USP3-215ENST00000559771 SERPINB2P05120 415 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 IRS1P35568 1242 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 HTRA3P83110 453 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 TBC1D9BQ66K14 1250 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 ZNF790Q6PG37 636 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 RBM46Q8TBY0 533 aaKnown RBP7.83□□□□□ -1.16
USP3-215ENST00000559771 RNF181Q9P0P0 153 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 FER1L6Q2WGJ9 1857 aa7.83□□□□□ -1.16
USP3-215ENST00000559771 PCNTO95613 3336 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 KRTAP4-8A0A0G2JLE6 195 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 GNAT3A8MTJ3 354 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 NFKBIEO00221 500 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 FOXK2Q01167 660 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 RSPH6AQ9H0K4 717 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 RRAGCQ9HB90 399 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 ARFGEF2Q9Y6D5 1785 aa7.82□□□□□ -1.16
USP3-215ENST00000559771 SLX4Q8IY92 1834 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 PRAMEF22A3QJZ6 481 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 U2SURPO15042 1029 aaKnown RBP7.81□□□□□ -1.16
USP3-215ENST00000559771 CAMTA2O94983 1202 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 ALDH1A1P00352 501 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 A1BGP04217 495 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 ITGB2P05107 769 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 CNGB1Q14028 1251 aaPredicted RBP7.81□□□□□ -1.16
USP3-215ENST00000559771 FAM161AQ3B820 660 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 PRR5LQ6MZQ0 368 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 BICDL1Q6ZP65 573 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 C2CD5Q86YS7 1000 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 Q8N3U1 123 aa7.81□□□□□ -1.16
USP3-215ENST00000559771 CCDC24Q8N4L8 307 aa7.81□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 128.2 ms