RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 ABCC12Q96J65 1359 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 LRP5O75197 1615 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 IFIT1P09914 478 aaKnown RBP15.34■□□□□ 0.05
USP3-213ENST00000559711 RXRBP28702 533 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 PROM2Q8N271 834 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 IL27Q8NEV9 243 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 ZNF512BQ96KM6 892 aaPredicted RBP15.34■□□□□ 0.05
USP3-213ENST00000559711 FAM227BQ96M60 508 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 MPHOSPH8Q99549 860 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 PAG1Q9NWQ8 432 aa15.34■□□□□ 0.05
USP3-213ENST00000559711 CD2BP2O95400 341 aaKnown RBP15.33■□□□□ 0.04
USP3-213ENST00000559711 FGFR2P21802 821 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 GORABQ5T7V8 394 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 TPTE2Q6XPS3 522 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 ANTXR1Q9H6X2 564 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 PALD1Q9ULE6 856 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 NDUFB9Q9Y6M9 179 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 BRWD3Q6RI45 1802 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 TAF1LQ8IZX4 1826 aa15.33■□□□□ 0.04
USP3-213ENST00000559711 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 A0A0D9SFI3 127 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 PLSCR1O15162 318 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 GTF2E1P29083 439 aaPredicted RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 IGHMBP2P38935 993 aaKnown RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 PUM3Q15397 648 aaKnown RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 TXNRD1Q16881 649 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 TTC39AQ5SRH9 613 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 C3orf67Q6ZVT6 689 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 NBPF5PQ86XG9 351 aaPredicted RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 LPIN2Q92539 896 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 CDC5LQ99459 802 aaKnown RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 ANP32EQ9BTT0 268 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 MYH3P11055 1940 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 K7ELQ4 463 aaPredicted RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 GOLIM4O00461 696 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 PHF14O94880 888 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 SSFA2P28290 1259 aa15.32■□□□□ 0.04
USP3-213ENST00000559711 DDX46Q7L014 1031 aaKnown RBP15.32■□□□□ 0.04
USP3-213ENST00000559711 DDX60Q8IY21 1712 aaKnown RBP15.31■□□□□ 0.04
USP3-213ENST00000559711 MED23Q9ULK4 1368 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 CCDC171Q6TFL3 1326 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 ST18O60284 1047 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 PTH1RQ03431 593 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 MAP4K1Q92918 833 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 KCNB2Q92953 911 aa15.31■□□□□ 0.04
USP3-213ENST00000559711 EP400Q96L91 3159 aa15.3■□□□□ 0.04
USP3-213ENST00000559711 AK9Q5TCS8 1911 aa15.3■□□□□ 0.04
USP3-213ENST00000559711 NLRP3Q96P20 1036 aa15.3■□□□□ 0.04
USP3-213ENST00000559711 LAMB2P55268 1798 aa15.3■□□□□ 0.04
USP3-213ENST00000559711 NFIXQ14938 502 aa15.29■□□□□ 0.04
USP3-213ENST00000559711 NECTIN1Q15223 517 aa15.29■□□□□ 0.04
USP3-213ENST00000559711 ANKRD18AQ8IVF6 992 aa15.29■□□□□ 0.04
USP3-213ENST00000559711 HELBQ8NG08 1087 aaPredicted RBP15.29■□□□□ 0.04
USP3-213ENST00000559711 BSDC1Q9NW68 430 aaPredicted RBP15.29■□□□□ 0.04
USP3-213ENST00000559711 RGS17Q9UGC6 210 aaPredicted RBP15.29■□□□□ 0.04
USP3-213ENST00000559711 CARMIL3Q8ND23 1372 aa15.29■□□□□ 0.04
USP3-213ENST00000559711 SNX14Q9Y5W7 946 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 COL24A1Q17RW2 1714 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 TAF5LO75529 589 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 UQCRFS1P1P0C7P4 283 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 GYS1P13807 737 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 SLC5A1P13866 664 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 ARID4AP29374 1257 aaPredicted RBP15.28■□□□□ 0.04
USP3-213ENST00000559711 NEK4P51957 841 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 CHRNDQ07001 517 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 SCARF1Q14162 830 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 MCMDC2Q4G0Z9 681 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 CCDC102BQ68D86 513 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 ZNF589Q86UQ0 364 aaPredicted RBP15.28■□□□□ 0.04
USP3-213ENST00000559711 RASEFQ8IZ41 740 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 SLKQ9H2G2 1235 aaPredicted RBP15.28■□□□□ 0.04
USP3-213ENST00000559711 HELLSQ9NRZ9 838 aa15.28■□□□□ 0.04
USP3-213ENST00000559711 RNF113AO15541 343 aaKnown RBP15.27■□□□□ 0.03
USP3-213ENST00000559711 DDIT3P35638 169 aa15.27■□□□□ 0.03
USP3-213ENST00000559711 MCAMP43121 646 aa15.27■□□□□ 0.03
USP3-213ENST00000559711 MCM2P49736 904 aa15.27■□□□□ 0.03
USP3-213ENST00000559711 FKBP4Q02790 459 aaKnown RBP eCLIP15.27■□□□□ 0.03
USP3-213ENST00000559711 LRRFIP1Q32MZ4 808 aaKnown RBP15.27■□□□□ 0.03
USP3-213ENST00000559711 ZMYM1Q5SVZ6 1142 aa15.27■□□□□ 0.03
USP3-213ENST00000559711 RBM8AQ9Y5S9 174 aaKnown RBP15.27■□□□□ 0.03
USP3-213ENST00000559711 APBA3O96018 575 aa15.26■□□□□ 0.03
USP3-213ENST00000559711 TM4SF1P30408 202 aa15.26■□□□□ 0.03
USP3-213ENST00000559711 ZAP70P43403 619 aa15.26■□□□□ 0.03
USP3-213ENST00000559711 SPEF2Q9C093 1822 aa15.26■□□□□ 0.03
USP3-213ENST00000559711 CHGBP05060 677 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 ZFYP08048 801 aaPredicted RBP15.25■□□□□ 0.03
USP3-213ENST00000559711 PHKA1P46020 1223 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 RPS8P62241 208 aaKnown RBP15.25■□□□□ 0.03
USP3-213ENST00000559711 SPRYD3Q8NCJ5 442 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 CELF1Q92879 486 aaKnown RBP15.25■□□□□ 0.03
USP3-213ENST00000559711 C4AP0C0L4 1744 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 SNAP23O00161 211 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 CREB3L3Q68CJ9 461 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 PRPF40BQ6NWY9 871 aaKnown RBP15.25■□□□□ 0.03
USP3-213ENST00000559711 POTEAQ6S8J7 498 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 FBXO41Q8TF61 875 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 AKT1S1Q96B36 256 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 SEC62Q99442 399 aaKnown RBP15.25■□□□□ 0.03
USP3-213ENST00000559711 TM6SF1Q9BZW5 370 aa15.25■□□□□ 0.03
USP3-213ENST00000559711 MINPP1Q9UNW1 487 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms