RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 TAOK3Q9H2K8 898 aa27.03■■□□□ 1.92
SNX1-206ENST00000559389 MINPP1Q9UNW1 487 aa27.03■■□□□ 1.92
SNX1-206ENST00000559389 GPSM2P81274 684 aa27.02■■□□□ 1.92
SNX1-206ENST00000559389 ATP8B2P98198 1209 aa27.02■■□□□ 1.92
SNX1-206ENST00000559389 FKBP4Q02790 459 aaKnown RBP eCLIP27.02■■□□□ 1.92
SNX1-206ENST00000559389 LDHAL6AQ6ZMR3 332 aa27.02■■□□□ 1.92
SNX1-206ENST00000559389 PSMD1Q99460 953 aa27.02■■□□□ 1.92
SNX1-206ENST00000559389 XDHP47989 1333 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 DPP8Q6V1X1 898 aaPredicted RBP27.01■■□□□ 1.91
SNX1-206ENST00000559389 MPNDQ8N594 471 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 SSH3Q8TE77 659 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 PUS3Q9BZE2 481 aaKnown RBP27.01■■□□□ 1.91
SNX1-206ENST00000559389 COPRSQ9NQ92 184 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 CNNM1Q9NRU3 951 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 PODXL2Q9NZ53 605 aa27.01■■□□□ 1.91
SNX1-206ENST00000559389 SBF1O95248 1867 aa27■■□□□ 1.91
SNX1-206ENST00000559389 RTFDC1Q9BY42 306 aaPredicted RBP27■■□□□ 1.91
SNX1-206ENST00000559389 NSFL1CQ9UNZ2 370 aaKnown RBP27■■□□□ 1.91
SNX1-206ENST00000559389 CHRNDQ07001 517 aa26.99■■□□□ 1.91
SNX1-206ENST00000559389 FBXO3Q9UK99 471 aa26.99■■□□□ 1.91
SNX1-206ENST00000559389 PA2G4Q9UQ80 394 aaKnown RBP26.99■■□□□ 1.91
SNX1-206ENST00000559389 RIPOR2Q9Y4F9 1068 aa26.99■■□□□ 1.91
SNX1-206ENST00000559389 TIAM2Q8IVF5 1701 aa26.99■■□□□ 1.91
SNX1-206ENST00000559389 EYA2O00167 538 aa26.98■■□□□ 1.91
SNX1-206ENST00000559389 LRRC24Q50LG9 513 aa26.98■■□□□ 1.91
SNX1-206ENST00000559389 RPAP2Q8IXW5 612 aaPredicted RBP26.98■■□□□ 1.91
SNX1-206ENST00000559389 CIAO1O76071 339 aa26.97■■□□□ 1.91
SNX1-206ENST00000559389 PRELPP51888 382 aa26.97■■□□□ 1.91
SNX1-206ENST00000559389 ANKRD2Q9GZV1 360 aa26.97■■□□□ 1.91
SNX1-206ENST00000559389 ANKIB1Q9P2G1 1089 aa26.97■■□□□ 1.91
SNX1-206ENST00000559389 MROH5Q6ZUA9 1318 aa26.96■■□□□ 1.91
SNX1-206ENST00000559389 SIRT2Q8IXJ6 389 aa26.96■■□□□ 1.91
SNX1-206ENST00000559389 SUPT20HQ8NEM7 779 aa26.96■■□□□ 1.91
SNX1-206ENST00000559389 SIL1Q9H173 461 aa26.96■■□□□ 1.91
SNX1-206ENST00000559389 CHD4Q14839 1912 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 DICER1Q9UPY3 1922 aaKnown RBP26.95■■□□□ 1.9
SNX1-206ENST00000559389 UFL1O94874 794 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 AAMPQ13685 434 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 ATG9AQ7Z3C6 839 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 EXOC6Q8TAG9 804 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 TBC1D16Q8TBP0 767 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 GGA1Q9UJY5 639 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 CCDC88AQ3V6T2 1871 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 COL4A5P29400 1685 aa26.95■■□□□ 1.9
SNX1-206ENST00000559389 LMNB1P20700 586 aa26.94■■□□□ 1.9
SNX1-206ENST00000559389 ATP2B4P23634 1241 aa26.94■■□□□ 1.9
SNX1-206ENST00000559389 IRX6P78412 446 aaPredicted RBP26.94■■□□□ 1.9
SNX1-206ENST00000559389 VGLL2Q8N8G2 317 aa26.94■■□□□ 1.9
SNX1-206ENST00000559389 ZNF277Q9NRM2 450 aaPredicted RBP26.94■■□□□ 1.9
SNX1-206ENST00000559389 POLLQ9UGP5 575 aa26.94■■□□□ 1.9
SNX1-206ENST00000559389 HMMRO75330 724 aa26.92■■□□□ 1.9
SNX1-206ENST00000559389 IL15P40933 162 aaPredicted RBP26.92■■□□□ 1.9
SNX1-206ENST00000559389 IARSP41252 1262 aaKnown RBP26.92■■□□□ 1.9
SNX1-206ENST00000559389 METTL24Q5JXM2 366 aa26.92■■□□□ 1.9
SNX1-206ENST00000559389 HELBQ8NG08 1087 aaPredicted RBP26.92■■□□□ 1.9
SNX1-206ENST00000559389 LEMD3Q9Y2U8 911 aa26.92■■□□□ 1.9
SNX1-206ENST00000559389 PCDHB15Q9Y5E8 787 aa26.92■■□□□ 1.9
SNX1-206ENST00000559389 C6orf229H3BNL8 230 aa26.91■■□□□ 1.9
SNX1-206ENST00000559389 TAF5LO75529 589 aa26.91■■□□□ 1.9
SNX1-206ENST00000559389 VPS33BQ9H267 617 aa26.91■■□□□ 1.9
SNX1-206ENST00000559389 NOP58Q9Y2X3 529 aaKnown RBP26.91■■□□□ 1.9
SNX1-206ENST00000559389 MED23Q9ULK4 1368 aa26.91■■□□□ 1.9
SNX1-206ENST00000559389 ZNF804BA4D1E1 1349 aa26.9■■□□□ 1.9
SNX1-206ENST00000559389 KIAA2012Q0VF49 1180 aa26.9■■□□□ 1.9
SNX1-206ENST00000559389 C9orf131Q5VYM1 1079 aa26.9■■□□□ 1.9
SNX1-206ENST00000559389 GPR101Q96P66 508 aaPredicted RBP26.9■■□□□ 1.9
SNX1-206ENST00000559389 EYA3Q99504 573 aa26.9■■□□□ 1.9
SNX1-206ENST00000559389 RNF181Q9P0P0 153 aa26.9■■□□□ 1.9
SNX1-206ENST00000559389 GOLGB1Q14789 3259 aaKnown RBP26.9■■□□□ 1.9
SNX1-206ENST00000559389 WTIPA6NIX2 430 aaPredicted RBP26.89■■□□□ 1.9
SNX1-206ENST00000559389 PPIP5K2O43314 1243 aa26.89■■□□□ 1.9
SNX1-206ENST00000559389 AOC3Q16853 763 aa26.89■■□□□ 1.9
SNX1-206ENST00000559389 ARAP2Q8WZ64 1704 aa26.89■■□□□ 1.9
SNX1-206ENST00000559389 SURF6O75683 361 aaKnown RBP26.88■■□□□ 1.89
SNX1-206ENST00000559389 PDE8BO95263 885 aa26.88■■□□□ 1.89
SNX1-206ENST00000559389 KCNJ4P48050 445 aa26.88■■□□□ 1.89
SNX1-206ENST00000559389 IRS2Q9Y4H2 1338 aa26.88■■□□□ 1.89
SNX1-206ENST00000559389 SNAP23O00161 211 aa26.87■■□□□ 1.89
SNX1-206ENST00000559389 G3BP1Q13283 466 aaKnown RBP eCLIP26.87■■□□□ 1.89
SNX1-206ENST00000559389 WASHC4Q2M389 1173 aa26.87■■□□□ 1.89
SNX1-206ENST00000559389 KLRK1P26718 216 aa26.86■■□□□ 1.89
SNX1-206ENST00000559389 UBE4AQ14139 1066 aa26.86■■□□□ 1.89
SNX1-206ENST00000559389 LARGE2Q8N3Y3 721 aa26.86■■□□□ 1.89
SNX1-206ENST00000559389 CEP126Q9P2H0 1117 aa26.86■■□□□ 1.89
SNX1-206ENST00000559389 ZNF609O15014 1411 aa26.85■■□□□ 1.89
SNX1-206ENST00000559389 PUM3Q15397 648 aaKnown RBP26.85■■□□□ 1.89
SNX1-206ENST00000559389 C15orf52Q6ZUT6 534 aaKnown RBP26.85■■□□□ 1.89
SNX1-206ENST00000559389 EXOC6BQ9Y2D4 811 aa26.85■■□□□ 1.89
SNX1-206ENST00000559389 ZC3H4Q9UPT8 1303 aaKnown RBP26.85■■□□□ 1.89
SNX1-206ENST00000559389 FGFR2P21802 821 aa26.84■■□□□ 1.89
SNX1-206ENST00000559389 OS9Q13438 667 aaPredicted RBP26.84■■□□□ 1.89
SNX1-206ENST00000559389 ZC3H12CQ9C0D7 883 aaKnown RBP26.84■■□□□ 1.89
SNX1-206ENST00000559389 RIMBP2O15034 1052 aa26.83■■□□□ 1.89
SNX1-206ENST00000559389 SASH1O94885 1247 aa26.83■■□□□ 1.89
SNX1-206ENST00000559389 TFCP2Q12800 502 aa26.83■■□□□ 1.89
SNX1-206ENST00000559389 NIM1KQ8IY84 436 aa26.83■■□□□ 1.89
SNX1-206ENST00000559389 HSP90AB4PQ58FF6 505 aa26.82■■□□□ 1.88
SNX1-206ENST00000559389 TXNRD3Q86VQ6 643 aa26.82■■□□□ 1.88
SNX1-206ENST00000559389 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP26.82■■□□□ 1.88
SNX1-206ENST00000559389 ATP2B3Q16720 1220 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 57.9 ms