RNA–Protein interactions for RNA: ENST00000558093.1

SPG11-206, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-206ENST00000558093 SMG9Q9H0W8 520 aaKnown RBP6.33□□□□□ -1.4
SPG11-206ENST00000558093 PRDM6Q9NQX0 595 aa6.33□□□□□ -1.4
SPG11-206ENST00000558093 FRRS1LQ9P0K9 344 aa6.33□□□□□ -1.4
SPG11-206ENST00000558093 TMEM63CQ9P1W3 806 aa6.33□□□□□ -1.4
SPG11-206ENST00000558093 BIN2Q9UBW5 565 aaPredicted RBP6.33□□□□□ -1.4
SPG11-206ENST00000558093 ZBTB42B2RXF5 422 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 FZD6O60353 706 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 TRAPPC3LQ5T215 181 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 C20orf204Q6ZNR8 217 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 ALYREFQ86V81 257 aaKnown RBP6.32□□□□□ -1.4
SPG11-206ENST00000558093 PLD4Q96BZ4 506 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 GGNBP2Q9H3C7 697 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 CCDC87Q9NVE4 849 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 KANSL3Q9P2N6 904 aa6.32□□□□□ -1.4
SPG11-206ENST00000558093 PHACTR2O75167 634 aa6.31□□□□□ -1.4
SPG11-206ENST00000558093 HOXD8P13378 290 aaPredicted RBP6.31□□□□□ -1.4
SPG11-206ENST00000558093 CES1P23141 567 aa6.31□□□□□ -1.4
SPG11-206ENST00000558093 KCNA1Q09470 495 aa6.31□□□□□ -1.4
SPG11-206ENST00000558093 TMC1Q8TDI8 760 aa6.31□□□□□ -1.4
SPG11-206ENST00000558093 DCAF5Q96JK2 942 aa6.31□□□□□ -1.4
SPG11-206ENST00000558093 CYP2E1P05181 493 aaPredicted RBP6.3□□□□□ -1.4
SPG11-206ENST00000558093 PDIA4P13667 645 aaKnown RBP6.3□□□□□ -1.4
SPG11-206ENST00000558093 NID1P14543 1247 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 COL8A1P27658 744 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 GSK3AP49840 483 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 AFF1P51825 1210 aaKnown RBP6.3□□□□□ -1.4
SPG11-206ENST00000558093 RAC1P63000 192 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 GDF6Q6KF10 455 aaPredicted RBP6.3□□□□□ -1.4
SPG11-206ENST00000558093 WFDC8Q8IUA0 241 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 SNX29Q8TEQ0 813 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 TRAIPQ9BWF2 469 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 GNEQ9Y223 722 aaKnown RBP6.3□□□□□ -1.4
SPG11-206ENST00000558093 IVNS1ABPQ9Y6Y0 642 aa6.3□□□□□ -1.4
SPG11-206ENST00000558093 SOWAHDA6NJG2 315 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 FAM177BA6PVY3 158 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 PATL2C9JE40 543 aaKnown RBP6.29□□□□□ -1.4
SPG11-206ENST00000558093 FAM229AH3BQW9 127 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 SMNDC1O75940 238 aaKnown RBP eCLIP6.29□□□□□ -1.4
SPG11-206ENST00000558093 SPATA31C1P0DKV0 1188 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 ARHGAP4P98171 946 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 TRIM28Q13263 835 aaKnown RBP6.29□□□□□ -1.4
SPG11-206ENST00000558093 PDE3BQ13370 1112 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 XKR5Q6UX68 686 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 GJD3Q8N144 294 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 C1orf127Q8N9H9 656 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 CNTN3Q9P232 1028 aa6.29□□□□□ -1.4
SPG11-206ENST00000558093 TNFRSF21O75509 655 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 APBA3O96018 575 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 COL13A1Q5TAT6 717 aaPredicted RBP6.28□□□□□ -1.4
SPG11-206ENST00000558093 CEP135Q66GS9 1140 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 MSL1Q68DK7 614 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 DMRTC2Q8IXT2 367 aaPredicted RBP6.28□□□□□ -1.4
SPG11-206ENST00000558093 KCTD17Q8N5Z5 321 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 PMEPA1Q969W9 287 aa6.28□□□□□ -1.4
SPG11-206ENST00000558093 FOXD3Q9UJU5 478 aaPredicted RBP6.28□□□□□ -1.4
SPG11-206ENST00000558093 KIF4AO95239 1232 aa6.27□□□□□ -1.41
SPG11-206ENST00000558093 ATP11AP98196 1134 aa6.27□□□□□ -1.41
SPG11-206ENST00000558093 COL9A3Q14050 684 aaPredicted RBP6.27□□□□□ -1.41
SPG11-206ENST00000558093 GPAT2Q6NUI2 795 aa6.27□□□□□ -1.41
SPG11-206ENST00000558093 AEBP1Q8IUX7 1158 aa6.27□□□□□ -1.41
SPG11-206ENST00000558093 TTC9Q92623 222 aa6.27□□□□□ -1.41
SPG11-206ENST00000558093 A0A0A0MRY4 1105 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 NEFLP07196 543 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 PLA2G4EQ3MJ16 856 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 NACC1Q96RE7 527 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 LACRTQ9GZZ8 138 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 RASSF4Q9H2L5 321 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 TRIM33Q9UPN9 1127 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 AMOTL2Q9Y2J4 779 aa6.26□□□□□ -1.41
SPG11-206ENST00000558093 KRBA1A5PL33 1030 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 EREGO14944 169 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 EDN3P14138 238 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 MAPK1P28482 360 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 GRIK5Q16478 980 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 ECM1Q16610 540 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 IL22RA1Q8N6P7 574 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 CITED4Q96RK1 184 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 PBX4Q9BYU1 374 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 CHRDQ9H2X0 955 aa6.25□□□□□ -1.41
SPG11-206ENST00000558093 PTPRAP18433 802 aa6.24□□□□□ -1.41
SPG11-206ENST00000558093 FMR1NBQ8N0W7 255 aaPredicted RBP6.24□□□□□ -1.41
SPG11-206ENST00000558093 CACTIN-AS1Q8N1I8 211 aa6.24□□□□□ -1.41
SPG11-206ENST00000558093 CEP120Q8N960 986 aa6.24□□□□□ -1.41
SPG11-206ENST00000558093 SALL4Q9UJQ4 1053 aa6.24□□□□□ -1.41
SPG11-206ENST00000558093 DCTN4Q9UJW0 460 aa6.24□□□□□ -1.41
SPG11-206ENST00000558093 POLR3DP05423 398 aaPredicted RBP6.23□□□□□ -1.41
SPG11-206ENST00000558093 ACPPP15309 386 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 ELNP15502 786 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 CDC27P30260 824 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 GRIK4Q16099 956 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 DTWD1Q8N5C7 304 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 DMRTB1Q96MA1 342 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 FAM129BQ96TA1 746 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 MUC3BQ9H195 1237 aa6.23□□□□□ -1.41
SPG11-206ENST00000558093 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP6.23□□□□□ -1.41
SPG11-206ENST00000558093 C1QTNF9BB2RNN3 333 aa6.22□□□□□ -1.41
SPG11-206ENST00000558093 MSTNO14793 375 aa6.22□□□□□ -1.41
SPG11-206ENST00000558093 GPR182O15218 404 aa6.22□□□□□ -1.41
SPG11-206ENST00000558093 IGHA1P01876 353 aa6.22□□□□□ -1.41
SPG11-206ENST00000558093 CDC25BP30305 580 aa6.22□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms