RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 ZC3H12CQ9C0D7 883 aaKnown RBP29.06■■■□□ 2.24
CHD4-214ENST00000545942 SPINK5Q9NQ38 1064 aaPredicted RBP29.06■■■□□ 2.24
CHD4-214ENST00000545942 CNOT7Q9UIV1 285 aaKnown RBP29.06■■■□□ 2.24
CHD4-214ENST00000545942 PSMD14O00487 310 aa29.05■■■□□ 2.24
CHD4-214ENST00000545942 DOK7Q18PE1 504 aa29.05■■■□□ 2.24
CHD4-214ENST00000545942 DNAAF4Q8WXU2 420 aa29.05■■■□□ 2.24
CHD4-214ENST00000545942 MYH16Q9H6N6 1097 aa29.05■■■□□ 2.24
CHD4-214ENST00000545942 H7C1D1 291 aa29.04■■■□□ 2.24
CHD4-214ENST00000545942 H7C1W4 665 aa29.04■■■□□ 2.24
CHD4-214ENST00000545942 GCKRQ14397 625 aa29.04■■■□□ 2.24
CHD4-214ENST00000545942 UBE3BQ7Z3V4 1068 aa29.04■■■□□ 2.24
CHD4-214ENST00000545942 DPF2Q92785 391 aa29.04■■■□□ 2.24
CHD4-214ENST00000545942 ZBTB12Q9Y330 459 aaPredicted RBP29.04■■■□□ 2.24
CHD4-214ENST00000545942 RASSF10A6NK89 507 aa29.03■■■□□ 2.24
CHD4-214ENST00000545942 VEGFBP49765 207 aa29.03■■■□□ 2.24
CHD4-214ENST00000545942 MICALL2Q8IY33 904 aa29.03■■■□□ 2.24
CHD4-214ENST00000545942 GREM2Q9H772 168 aa29.03■■■□□ 2.24
CHD4-214ENST00000545942 XDHP47989 1333 aa29.03■■■□□ 2.24
CHD4-214ENST00000545942 LINS1Q8NG48 757 aa29.02■■■□□ 2.24
CHD4-214ENST00000545942 ZC3H15Q8WU90 426 aaKnown RBP29.02■■■□□ 2.24
CHD4-214ENST00000545942 PGAP2Q9UHJ9 254 aa29.02■■■□□ 2.24
CHD4-214ENST00000545942 ABT1Q9ULW3 272 aaKnown RBP29.02■■■□□ 2.24
CHD4-214ENST00000545942 RTL9Q8NET4 1388 aa29.02■■■□□ 2.24
CHD4-214ENST00000545942 G3V3G9 751 aa29.01■■■□□ 2.23
CHD4-214ENST00000545942 TRAF5O00463 557 aa29.01■■■□□ 2.23
CHD4-214ENST00000545942 RPS12P25398 132 aaKnown RBP29.01■■■□□ 2.23
CHD4-214ENST00000545942 FMR1Q06787 632 aaKnown RBP eCLIP29.01■■■□□ 2.232e-8■■■■□ 24.5
CHD4-214ENST00000545942 DEFB115Q30KQ5 88 aa29.01■■■□□ 2.23
CHD4-214ENST00000545942 DCAF8Q5TAQ9 597 aa29.01■■■□□ 2.23
CHD4-214ENST00000545942 TRPM4Q8TD43 1214 aa29.01■■■□□ 2.23
CHD4-214ENST00000545942 SHTN1A0MZ66 631 aa29■■■□□ 2.23
CHD4-214ENST00000545942 HIRAP54198 1017 aaPredicted RBP29■■■□□ 2.23
CHD4-214ENST00000545942 COL13A1Q5TAT6 717 aaPredicted RBP29■■■□□ 2.23
CHD4-214ENST00000545942 KCNQ5Q9NR82 932 aa29■■■□□ 2.23
CHD4-214ENST00000545942 BSDC1Q9NW68 430 aaPredicted RBP29■■■□□ 2.23
CHD4-214ENST00000545942 ATP2B4P23634 1241 aa28.99■■■□□ 2.23
CHD4-214ENST00000545942 PLA2G12BQ9BX93 195 aa28.99■■■□□ 2.23
CHD4-214ENST00000545942 CASP7P55210 303 aa28.97■■■□□ 2.23
CHD4-214ENST00000545942 CST9Q5W186 159 aa28.97■■■□□ 2.23
CHD4-214ENST00000545942 GLIS2Q9BZE0 524 aaPredicted RBP28.96■■■□□ 2.23
CHD4-214ENST00000545942 MINPP1Q9UNW1 487 aa28.96■■■□□ 2.23
CHD4-214ENST00000545942 CACNA1FO60840 1977 aa28.95■■■□□ 2.23
CHD4-214ENST00000545942 VIL1P09327 827 aaKnown RBP28.95■■■□□ 2.23
CHD4-214ENST00000545942 SAMD7Q7Z3H4 446 aa28.95■■■□□ 2.23
CHD4-214ENST00000545942 IGHMBP2P38935 993 aaKnown RBP28.94■■■□□ 2.22
CHD4-214ENST00000545942 CDC37L1Q7L3B6 337 aa28.94■■■□□ 2.22
CHD4-214ENST00000545942 ZNF521Q96K83 1311 aa28.94■■■□□ 2.22
CHD4-214ENST00000545942 MYH3P11055 1940 aa28.94■■■□□ 2.22
CHD4-214ENST00000545942 F6X3S4 739 aa28.94■■■□□ 2.22
CHD4-214ENST00000545942 ITGA6P23229 1130 aa28.94■■■□□ 2.22
CHD4-214ENST00000545942 WDR33Q9C0J8 1336 aaKnown RBP28.93■■■□□ 2.22
CHD4-214ENST00000545942 CSF1RP07333 972 aa28.93■■■□□ 2.22
CHD4-214ENST00000545942 FAM161AQ3B820 660 aa28.93■■■□□ 2.22
CHD4-214ENST00000545942 TBC1D10BQ4KMP7 808 aaPredicted RBP28.93■■■□□ 2.22
CHD4-214ENST00000545942 BEND3Q5T5X7 828 aa28.93■■■□□ 2.22
CHD4-214ENST00000545942 TLL2Q9Y6L7 1015 aa28.93■■■□□ 2.22
CHD4-214ENST00000545942 CELF2O95319 508 aaKnown RBP28.92■■■□□ 2.22
CHD4-214ENST00000545942 MED23Q9ULK4 1368 aa28.91■■■□□ 2.22
CHD4-214ENST00000545942 EGFRP00533 1210 aa28.91■■■□□ 2.22
CHD4-214ENST00000545942 CCT4P50991 539 aaKnown RBP28.91■■■□□ 2.22
CHD4-214ENST00000545942 PODNQ7Z5L7 613 aa28.91■■■□□ 2.22
CHD4-214ENST00000545942 WTIPA6NIX2 430 aaPredicted RBP28.9■■■□□ 2.22
CHD4-214ENST00000545942 RSBN1LQ6PCB5 846 aaPredicted RBP28.9■■■□□ 2.22
CHD4-214ENST00000545942 PAXIP1Q6ZW49 1069 aaPredicted RBP28.9■■■□□ 2.22
CHD4-214ENST00000545942 AGBL3Q8NEM8 1001 aa28.9■■■□□ 2.22
CHD4-214ENST00000545942 AIDAQ96BJ3 306 aa28.9■■■□□ 2.22
CHD4-214ENST00000545942 MPHOSPH8Q99549 860 aa28.9■■■□□ 2.22
CHD4-214ENST00000545942 TRPM7Q96QT4 1865 aa28.89■■■□□ 2.22
CHD4-214ENST00000545942 ECE1P42892 770 aa28.89■■■□□ 2.21
CHD4-214ENST00000545942 RBM26Q5T8P6 1007 aaKnown RBP28.89■■■□□ 2.21
CHD4-214ENST00000545942 CAPNS2Q96L46 248 aa28.89■■■□□ 2.21
CHD4-214ENST00000545942 LEMD3Q9Y2U8 911 aa28.89■■■□□ 2.21
CHD4-214ENST00000545942 SCN9AQ15858 1988 aa28.89■■■□□ 2.21
CHD4-214ENST00000545942 ZNF609O15014 1411 aa28.89■■■□□ 2.21
CHD4-214ENST00000545942 FOXN1O15353 648 aa28.88■■■□□ 2.21
CHD4-214ENST00000545942 KIF4BQ2VIQ3 1234 aa28.88■■■□□ 2.21
CHD4-214ENST00000545942 USP48Q86UV5 1035 aa28.88■■■□□ 2.21
CHD4-214ENST00000545942 ZNF408Q9H9D4 720 aa28.88■■■□□ 2.21
CHD4-214ENST00000545942 WBP1LQ9NX94 342 aa28.88■■■□□ 2.21
CHD4-214ENST00000545942 USP17L3A6NCW0 530 aa28.87■■■□□ 2.21
CHD4-214ENST00000545942 USP17L4A6NCW7 530 aa28.87■■■□□ 2.21
CHD4-214ENST00000545942 USP17L1Q7RTZ2 530 aa28.87■■■□□ 2.21
CHD4-214ENST00000545942 SAPCD2Q86UD0 394 aa28.87■■■□□ 2.21
CHD4-214ENST00000545942 ANKRD2Q9GZV1 360 aa28.87■■■□□ 2.21
CHD4-214ENST00000545942 ANKRD18BA2A2Z9 1011 aa28.86■■■□□ 2.21
CHD4-214ENST00000545942 MAP2K1Q02750 393 aaPredicted RBP28.86■■■□□ 2.21
CHD4-214ENST00000545942 KRT26Q7Z3Y9 468 aa28.86■■■□□ 2.21
CHD4-214ENST00000545942 TNS4Q8IZW8 715 aa28.86■■■□□ 2.21
CHD4-214ENST00000545942 DCPSQ96C86 337 aaKnown RBP28.86■■■□□ 2.21
CHD4-214ENST00000545942 ZNF280AP59817 542 aaPredicted RBP28.85■■■□□ 2.21
CHD4-214ENST00000545942 FOXO4P98177 505 aa28.85■■■□□ 2.21
CHD4-214ENST00000545942 CYP4F22Q6NT55 531 aa28.85■■■□□ 2.21
CHD4-214ENST00000545942 SPEF2Q9C093 1822 aa28.85■■■□□ 2.21
CHD4-214ENST00000545942 GRM8O00222 908 aa28.84■■■□□ 2.21
CHD4-214ENST00000545942 CTCFP49711 727 aaPredicted RBP28.84■■■□□ 2.21
CHD4-214ENST00000545942 GRM1Q13255 1194 aa28.84■■■□□ 2.21
CHD4-214ENST00000545942 HHIPL1Q96JK4 782 aa28.84■■■□□ 2.21
CHD4-214ENST00000545942 GMLQ99445 158 aa28.84■■■□□ 2.21
CHD4-214ENST00000545942 COA1Q9GZY4 146 aa28.84■■■□□ 2.21
CHD4-214ENST00000545942 ZNF804BA4D1E1 1349 aa28.83■■■□□ 2.21
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms