RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 NFIAQ12857 509 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 SETDB1Q15047 1291 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 UVSSAQ2YD98 709 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 ZC3HAV1Q7Z2W4 902 aaKnown RBP7.01□□□□□ -1.29
USP48-215ENST00000534705 HINFPQ9BQA5 517 aa7.01□□□□□ -1.29
USP48-215ENST00000534705 USP17L15C9J2P7 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L10C9JJH3 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L13C9JLJ4 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L12C9JPN9 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L11C9JVI0 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L21D6R901 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L18D6R9N7 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L22D6RA61 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L17D6RBQ6 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L19D6RCP7 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L20D6RJB6 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 USP17L24Q0WX57 530 aa7□□□□□ -1.29
USP48-215ENST00000534705 LARP1Q6PKG0 1096 aaKnown RBP7□□□□□ -1.29
USP48-215ENST00000534705 DTX1Q86Y01 620 aa7□□□□□ -1.29
USP48-215ENST00000534705 AGGF1Q8N302 714 aaeCLIP7□□□□□ -1.29
USP48-215ENST00000534705 UBL7Q96S82 380 aaPredicted RBP7□□□□□ -1.29
USP48-215ENST00000534705 VRTNQ9H8Y1 702 aa7□□□□□ -1.29
USP48-215ENST00000534705 ARID1BQ8NFD5 2236 aaPredicted RBP6.99□□□□□ -1.29
USP48-215ENST00000534705 RASA1P20936 1047 aa6.99□□□□□ -1.29
USP48-215ENST00000534705 PTK7Q13308 1070 aa6.99□□□□□ -1.29
USP48-215ENST00000534705 RNF43Q68DV7 783 aa6.99□□□□□ -1.29
USP48-215ENST00000534705 KLK14Q9P0G3 267 aa6.99□□□□□ -1.29
USP48-215ENST00000534705 J3QW42 95 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 SOX18P35713 384 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 DGKZQ13574 1117 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 C11orf91Q3C1V1 193 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 CRTC2Q53ET0 693 aaPredicted RBP6.98□□□□□ -1.29
USP48-215ENST00000534705 ARMC10Q8N2F6 343 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 DBNDD2Q9BQY9 259 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 TIMELESSQ9UNS1 1208 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 PPME1Q9Y570 386 aa6.98□□□□□ -1.29
USP48-215ENST00000534705 ARID3CA6NKF2 412 aa6.97□□□□□ -1.29
USP48-215ENST00000534705 XYLBO75191 536 aa6.97□□□□□ -1.29
USP48-215ENST00000534705 HOXD8P13378 290 aaPredicted RBP6.97□□□□□ -1.29
USP48-215ENST00000534705 SRPK2P78362 688 aaKnown RBP6.97□□□□□ -1.29
USP48-215ENST00000534705 ELOAQ14241 798 aaKnown RBP6.97□□□□□ -1.29
USP48-215ENST00000534705 UTP4Q969X6 686 aaKnown RBP6.97□□□□□ -1.29
USP48-215ENST00000534705 C1orf115Q9H7X2 142 aa6.97□□□□□ -1.29
USP48-215ENST00000534705 UTP3Q9NQZ2 479 aaKnown RBP eCLIP6.97□□□□□ -1.299e-7■■■■■ 30.8
USP48-215ENST00000534705 RTCBQ9Y3I0 505 aaKnown RBP6.97□□□□□ -1.29
USP48-215ENST00000534705 PRR19A6NJB7 356 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 ADAMTS4O75173 837 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 ANKMY2Q8IV38 441 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 CCDC82Q8N4S0 544 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 PBXIP1Q96AQ6 731 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 C7orf69Q9H7B7 122 aa6.96□□□□□ -1.3
USP48-215ENST00000534705 CD68P34810 354 aaPredicted RBP6.95□□□□□ -1.3
USP48-215ENST00000534705 ACAD11Q709F0 780 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 CLEC10AQ8IUN9 316 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 TRIM42Q8IWZ5 723 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 VTI1AQ96AJ9 217 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 FAM46AQ96IP4 442 aaKnown RBP6.95□□□□□ -1.3
USP48-215ENST00000534705 ARXQ96QS3 562 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 ADGRE2Q9UHX3 823 aa6.95□□□□□ -1.3
USP48-215ENST00000534705 OPLAHO14841 1288 aa6.94□□□□□ -1.3
USP48-215ENST00000534705 ATG7O95352 703 aa6.94□□□□□ -1.3
USP48-215ENST00000534705 DPYDQ12882 1025 aa6.94□□□□□ -1.3
USP48-215ENST00000534705 CMTR1Q8N1G2 835 aaKnown RBP6.94□□□□□ -1.3
USP48-215ENST00000534705 MYO19Q96H55 970 aa6.94□□□□□ -1.3
USP48-215ENST00000534705 NSUN5Q96P11 429 aaKnown RBP6.94□□□□□ -1.3
USP48-215ENST00000534705 FOXO3O43524 673 aa6.93□□□□□ -1.3
USP48-215ENST00000534705 MMP20O60882 483 aa6.93□□□□□ -1.3
USP48-215ENST00000534705 PPP1R15AO75807 674 aaPredicted RBP6.93□□□□□ -1.3
USP48-215ENST00000534705 MYRFLQ96LU7 910 aa6.93□□□□□ -1.3
USP48-215ENST00000534705 FAM83CQ9BQN1 747 aa6.93□□□□□ -1.3
USP48-215ENST00000534705 QTRT2Q9H974 415 aaKnown RBP6.93□□□□□ -1.3
USP48-215ENST00000534705 NOVA2Q9UNW9 492 aaKnown RBP6.93□□□□□ -1.3
USP48-215ENST00000534705 TRIM33Q9UPN9 1127 aa6.93□□□□□ -1.3
USP48-215ENST00000534705 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP6.92□□□□□ -1.3
USP48-215ENST00000534705 HMX2A2RU54 273 aa6.92□□□□□ -1.3
USP48-215ENST00000534705 LINC01387J3KSC0 135 aa6.92□□□□□ -1.3
USP48-215ENST00000534705 RFX1P22670 979 aa6.92□□□□□ -1.3
USP48-215ENST00000534705 KLHL23Q8NBE8 558 aa6.92□□□□□ -1.3
USP48-215ENST00000534705 GALNT11Q8NCW6 608 aa6.92□□□□□ -1.3
USP48-215ENST00000534705 JAG1P78504 1218 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 DUOXA2Q1HG44 320 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 SWI5Q1ZZU3 235 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 FAM117BQ6P1L5 589 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 NLRP13Q86W25 1043 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 RGL4Q8IZJ4 473 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 GIMAP7Q8NHV1 300 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 SHKBP1Q8TBC3 707 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 FAM200AQ8TCP9 573 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 ZMIZ1Q9ULJ6 1067 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 NISCHQ9Y2I1 1504 aa6.91□□□□□ -1.3
USP48-215ENST00000534705 SART1O43290 800 aaKnown RBP6.9□□□□□ -1.3
USP48-215ENST00000534705 WISP1O95388 367 aa6.9□□□□□ -1.3
USP48-215ENST00000534705 CDC27P30260 824 aa6.9□□□□□ -1.3
USP48-215ENST00000534705 FAM20CQ8IXL6 584 aa6.9□□□□□ -1.3
USP48-215ENST00000534705 SPACA7Q96KW9 195 aa6.9□□□□□ -1.3
USP48-215ENST00000534705 USP20Q9Y2K6 914 aa6.9□□□□□ -1.3
USP48-215ENST00000534705 ACIN1Q9UKV3 1341 aaKnown RBP6.9□□□□□ -1.3
USP48-215ENST00000534705 SMNDC1O75940 238 aaKnown RBP eCLIP6.89□□□□□ -1.31
USP48-215ENST00000534705 TREML1Q86YW5 311 aa6.89□□□□□ -1.31
USP48-215ENST00000534705 ASIC4Q96FT7 647 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 78.8 ms