RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 WHAMMQ8TF30 809 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 RNF25Q96BH1 459 aaPredicted RBP3.74□□□□□ -1.81
MCF2-208ENST00000519895 RUNDC1Q96C34 613 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 EMILIN1Q9Y6C2 1016 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 TTC28Q96AY4 2481 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 DUOX1Q9NRD9 1551 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 A0A087WZG4 1122 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 EVI5O60447 810 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 NFE2L2Q16236 605 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 GPR179Q6PRD1 2367 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 ANKRD36CQ5JPF3 1778 aa3.74□□□□□ -1.81
MCF2-208ENST00000519895 RNMTO43148 476 aaKnown RBP3.73□□□□□ -1.81
MCF2-208ENST00000519895 CELF2O95319 508 aaKnown RBP3.73□□□□□ -1.81
MCF2-208ENST00000519895 GRM1Q13255 1194 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 PRR23BQ6ZRT6 265 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 GPC2Q8N158 579 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 NECTIN2Q92692 538 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 GNAT3A8MTJ3 354 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 ZNF853P0CG23 659 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 CSB-PGBD3P0DP91 1061 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 MYLIPQ8WY64 445 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 ZIC5Q96T25 663 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 SLC52A2Q9HAB3 445 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 NLRP2Q9NX02 1062 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 CYP27B1O15528 508 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 NEFMP07197 916 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 SDHBP21912 280 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 CHRNA2Q15822 529 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 ZKSCAN4Q969J2 545 aaPredicted RBP3.73□□□□□ -1.81
MCF2-208ENST00000519895 SLC24A3Q9HC58 644 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 PARP3Q9Y6F1 533 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 KMT2EQ8IZD2 1858 aa3.73□□□□□ -1.81
MCF2-208ENST00000519895 ANP32CO43423 234 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 C1orf141Q5JVX7 400 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 SP8Q8IXZ3 490 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 COL1A1P02452 1464 aaPredicted RBP3.72□□□□□ -1.81
MCF2-208ENST00000519895 GJA8P48165 433 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 RRS1Q15050 365 aaKnown RBP3.72□□□□□ -1.81
MCF2-208ENST00000519895 SLC4A8Q2Y0W8 1093 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 GRIPAP1Q4V328 841 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 BMP8AQ7Z5Y6 402 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 IFT57Q9NWB7 429 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 CIZ1Q9ULV3 898 aaPredicted RBP3.72□□□□□ -1.81
MCF2-208ENST00000519895 ZNF521Q96K83 1311 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 CDHR2Q9BYE9 1310 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 SETXQ7Z333 2677 aaKnown RBP3.72□□□□□ -1.81
MCF2-208ENST00000519895 TAF4O00268 1085 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 FKBP1BP68106 108 aa3.72□□□□□ -1.81
MCF2-208ENST00000519895 MAST4O15021 2626 aa3.71□□□□□ -1.81
MCF2-208ENST00000519895 PALLDQ8WX93 1383 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 GNRH1P01148 92 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 IER5LQ5T953 404 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 TTLL6Q8N841 843 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 KCNV2Q8TDN2 545 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 AK7Q96M32 723 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 CACNA2D2Q9NY47 1150 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 TRIM17Q9Y577 477 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 ERVV-1B6SEH8 477 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 CHL1O00533 1208 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 IGSF3O75054 1194 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 HUNKP57058 714 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 TAF7Q15545 349 aaPredicted RBP3.71□□□□□ -1.82
MCF2-208ENST00000519895 CLEC4GQ6UXB4 293 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 TRMT2AQ8IZ69 625 aaKnown RBP3.71□□□□□ -1.82
MCF2-208ENST00000519895 PRSS33Q8NF86 280 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 UBE2OQ9C0C9 1292 aaKnown RBP3.71□□□□□ -1.82
MCF2-208ENST00000519895 JAG2Q9Y219 1238 aa3.71□□□□□ -1.82
MCF2-208ENST00000519895 RPS6KA4O75676 772 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 SULT6B1Q6IMI4 303 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 ZNF530Q6P9A1 599 aaPredicted RBP3.7□□□□□ -1.82
MCF2-208ENST00000519895 USP38Q8NB14 1042 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 CACNA1GO43497 2377 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 LRRC37AA6NMS7 1700 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 CYSRT1A8MQ03 144 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 IL6STP40189 918 aaPredicted RBP3.7□□□□□ -1.82
MCF2-208ENST00000519895 TMPOP42166 694 aaKnown RBP3.7□□□□□ -1.82
MCF2-208ENST00000519895 GNAI1P63096 354 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 SREBF2Q12772 1141 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 CSPP1Q1MSJ5 1256 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 MTHFSDQ2M296 383 aaKnown RBP3.7□□□□□ -1.82
MCF2-208ENST00000519895 NUTM2GQ5VZR2 741 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 SYNE4Q8N205 404 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 TMOD3Q9NYL9 352 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 GJB1P08034 283 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 FMNL2Q96PY5 1086 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 VPS33BQ9H267 617 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 ATG3Q9NT62 314 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 RYDENQ9NUL5 291 aaKnown RBP3.7□□□□□ -1.82
MCF2-208ENST00000519895 DLL3Q9NYJ7 618 aa3.7□□□□□ -1.82
MCF2-208ENST00000519895 MAPK8IP3Q9UPT6 1336 aa3.69□□□□□ -1.82
MCF2-208ENST00000519895 FAM208BQ5VWN6 2430 aa3.69□□□□□ -1.82
MCF2-208ENST00000519895 DDX60Q8IY21 1712 aaKnown RBP3.69□□□□□ -1.82
MCF2-208ENST00000519895 SZT2Q5T011 3432 aa3.69□□□□□ -1.82
MCF2-208ENST00000519895 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.69□□□□□ -1.82
MCF2-208ENST00000519895 PRR23AA6NEV1 266 aa3.69□□□□□ -1.82
MCF2-208ENST00000519895 FZD9O00144 591 aa3.69□□□□□ -1.82
MCF2-208ENST00000519895 HSP90B1P14625 803 aaKnown RBP3.69□□□□□ -1.82
MCF2-208ENST00000519895 LMOD1P29536 600 aaPredicted RBP3.69□□□□□ -1.82
MCF2-208ENST00000519895 MAGEA10P43363 369 aaPredicted RBP3.69□□□□□ -1.82
MCF2-208ENST00000519895 TRIM28Q13263 835 aaKnown RBP3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 52.1 ms