RNA–Protein interactions for RNA: ENST00000513248.1

NUP54-212, Transcript of nucleoporin 54, humanhuman

TSL 2

Gene NUP54, Length 531 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-212ENST00000513248 RNF112Q9ULX5 631 aa6.92□□□□□ -1.3
NUP54-212ENST00000513248 KCNA1Q09470 495 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 LCE3BQ5TA77 95 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 IGF2-ASQ6U949 168 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 TREML1Q86YW5 311 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 WFDC12Q8WWY7 111 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 LPIN3Q9BQK8 851 aa6.91□□□□□ -1.3
NUP54-212ENST00000513248 BRD2P25440 801 aaKnown RBP6.9□□□□□ -1.3
NUP54-212ENST00000513248 GRNP28799 593 aaKnown RBP6.9□□□□□ -1.3
NUP54-212ENST00000513248 GPLD1P80108 840 aa6.9□□□□□ -1.3
NUP54-212ENST00000513248 HELQQ8TDG4 1101 aa6.9□□□□□ -1.3
NUP54-212ENST00000513248 GTF3C2Q8WUA4 911 aaPredicted RBP6.9□□□□□ -1.3
NUP54-212ENST00000513248 EGFL7Q9UHF1 273 aa6.9□□□□□ -1.3
NUP54-212ENST00000513248 PERM1Q5SV97 790 aa6.89□□□□□ -1.31
NUP54-212ENST00000513248 DHX32Q7L7V1 743 aaKnown RBP6.89□□□□□ -1.31
NUP54-212ENST00000513248 WFDC8Q8IUA0 241 aa6.89□□□□□ -1.31
NUP54-212ENST00000513248 ETFBKMTQ8IXQ9 262 aa6.89□□□□□ -1.31
NUP54-212ENST00000513248 OPLAHO14841 1288 aa6.88□□□□□ -1.31
NUP54-212ENST00000513248 CPB1P15086 417 aa6.88□□□□□ -1.31
NUP54-212ENST00000513248 NOS3P29474 1203 aa6.88□□□□□ -1.31
NUP54-212ENST00000513248 SERPINB4P48594 390 aa6.88□□□□□ -1.31
NUP54-212ENST00000513248 ELMSAN1Q6PJG2 1045 aa6.88□□□□□ -1.31
NUP54-212ENST00000513248 ZBTB42B2RXF5 422 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 ICMTO60725 284 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 IREB2P48200 963 aaKnown RBP6.87□□□□□ -1.31
NUP54-212ENST00000513248 NRLP54845 237 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 RGL4Q8IZJ4 473 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 ZFATQ9P243 1243 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 STIM2Q9P246 746 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 USP20Q9Y2K6 914 aa6.87□□□□□ -1.31
NUP54-212ENST00000513248 RTCBQ9Y3I0 505 aaKnown RBP6.87□□□□□ -1.31
NUP54-212ENST00000513248 DLL1O00548 723 aa6.86□□□□□ -1.31
NUP54-212ENST00000513248 ZBTB39O15060 712 aa6.86□□□□□ -1.31
NUP54-212ENST00000513248 SF3B2Q13435 895 aaKnown RBP6.86□□□□□ -1.31
NUP54-212ENST00000513248 PRR23CQ6ZRP0 262 aa6.86□□□□□ -1.31
NUP54-212ENST00000513248 DZIP1LQ8IYY4 767 aaKnown RBP6.86□□□□□ -1.31
NUP54-212ENST00000513248 CMTR1Q8N1G2 835 aaKnown RBP6.86□□□□□ -1.31
NUP54-212ENST00000513248 ABTB2Q8N961 1025 aa6.86□□□□□ -1.31
NUP54-212ENST00000513248 MEGF10Q96KG7 1140 aa6.86□□□□□ -1.31
NUP54-212ENST00000513248 SRA1Q9HD15 236 aaKnown RBP6.86□□□□□ -1.31
NUP54-212ENST00000513248 DEAF1O75398 565 aaPredicted RBP6.85□□□□□ -1.31
NUP54-212ENST00000513248 EGFRP00533 1210 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 ZAP70P43403 619 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 FKBP4Q02790 459 aaKnown RBP eCLIP6.85□□□□□ -1.31
NUP54-212ENST00000513248 KRT25Q7Z3Z0 450 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 TMEM130Q8N3G9 435 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 CCER1Q8TC90 406 aaPredicted RBP6.85□□□□□ -1.31
NUP54-212ENST00000513248 DCAF11Q8TEB1 546 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 FAM13BQ9NYF5 915 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 MTMR7Q9Y216 660 aa6.85□□□□□ -1.31
NUP54-212ENST00000513248 SOWAHDA6NJG2 315 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 PATL2C9JE40 543 aaKnown RBP6.84□□□□□ -1.31
NUP54-212ENST00000513248 RARAP10276 462 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 HOXD8P13378 290 aaPredicted RBP6.84□□□□□ -1.31
NUP54-212ENST00000513248 TARSP26639 723 aaKnown RBP6.84□□□□□ -1.31
NUP54-212ENST00000513248 ARHGAP4P98171 946 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 MTMR3Q13615 1198 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 KCNMB2Q9Y691 235 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 IVNS1ABPQ9Y6Y0 642 aa6.84□□□□□ -1.31
NUP54-212ENST00000513248 XYLBO75191 536 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 SASH3O75995 380 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 PLAURQ03405 335 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 MAP4K3Q8IVH8 894 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 PIK3R5Q8WYR1 880 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 MRPL18Q9H0U6 180 aaKnown RBP6.83□□□□□ -1.32
NUP54-212ENST00000513248 SMG9Q9H0W8 520 aaKnown RBP6.83□□□□□ -1.32
NUP54-212ENST00000513248 AKTIPQ9H8T0 292 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 GOLGA2P5Q9HBQ8 144 aa6.83□□□□□ -1.32
NUP54-212ENST00000513248 TLR7Q9NYK1 1049 aaKnown RBP6.83□□□□□ -1.32
NUP54-212ENST00000513248 RB1CC1Q8TDY2 1594 aa6.82□□□□□ -1.32
NUP54-212ENST00000513248 MPSTP25325 297 aa6.82□□□□□ -1.32
NUP54-212ENST00000513248 ZNF211Q13398 564 aaPredicted RBP6.82□□□□□ -1.32
NUP54-212ENST00000513248 TRIP4Q15650 581 aaPredicted RBP6.82□□□□□ -1.32
NUP54-212ENST00000513248 MCTP1Q6DN14 999 aa6.82□□□□□ -1.32
NUP54-212ENST00000513248 Q6ZS46 218 aa6.82□□□□□ -1.32
NUP54-212ENST00000513248 KRTAP19-1Q8IUB9 90 aa6.82□□□□□ -1.32
NUP54-212ENST00000513248 FZD6O60353 706 aa6.81□□□□□ -1.32
NUP54-212ENST00000513248 FSTP19883 344 aa6.81□□□□□ -1.32
NUP54-212ENST00000513248 SOX18P35713 384 aa6.81□□□□□ -1.32
NUP54-212ENST00000513248 EIF1AXP47813 144 aaKnown RBP6.81□□□□□ -1.32
NUP54-212ENST00000513248 MLLT1Q03111 559 aaPredicted RBP6.81□□□□□ -1.32
NUP54-212ENST00000513248 CACTIN-AS1Q8N1I8 211 aa6.81□□□□□ -1.32
NUP54-212ENST00000513248 GPR152Q8TDT2 470 aa6.81□□□□□ -1.32
NUP54-212ENST00000513248 BTBD11A6QL63 1104 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 UBAP1LF5GYI3 381 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 F8W735 103 aaPredicted RBP6.8□□□□□ -1.32
NUP54-212ENST00000513248 FAM13AO94988 1023 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 IGHA2P01877 340 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 EIF2AK2P19525 551 aaKnown RBP6.8□□□□□ -1.32
NUP54-212ENST00000513248 NOM1Q5C9Z4 860 aaKnown RBP6.8□□□□□ -1.32
NUP54-212ENST00000513248 ATCAYQ86WG3 371 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 AEBP1Q8IUX7 1158 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 PLD4Q96BZ4 506 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 ANO2Q9NQ90 1003 aa6.8□□□□□ -1.32
NUP54-212ENST00000513248 COL17A1Q9UMD9 1497 aaPredicted RBP6.79□□□□□ -1.32
NUP54-212ENST00000513248 GSC2O15499 205 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 ABL1P00519 1130 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 PSAPP07602 524 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 CD97P48960 835 aa6.79□□□□□ -1.32
NUP54-212ENST00000513248 NLRP13Q86W25 1043 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 117.7 ms