RNA–Protein interactions for RNA: ENST00000512107.5

MATR3-238, Transcript of matrin 3, human

TSL 4

Gene MATR3, Length 579 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MATR3-238	ENST00000512107	ATP6V0A2	Q9Y487	856 aa		18.16	■□□□□ 0.5
MATR3-238	ENST00000512107	BBOX1	O75936	387 aa		18.15	■□□□□ 0.5
MATR3-238	ENST00000512107	RPAP2	Q8IXW5	612 aa	Predicted RBP	18.15	■□□□□ 0.5
MATR3-238	ENST00000512107	SP8	Q8IXZ3	490 aa		18.15	■□□□□ 0.5
MATR3-238	ENST00000512107	CDC5L	Q99459	802 aa	Known RBP	18.15	■□□□□ 0.5
MATR3-238	ENST00000512107	BSDC1	Q9NW68	430 aa	Predicted RBP	18.15	■□□□□ 0.5
MATR3-238	ENST00000512107	TAF5L	O75529	589 aa		18.14	■□□□□ 0.49
MATR3-238	ENST00000512107	PELP1	Q8IZL8	1130 aa	Known RBP	18.14	■□□□□ 0.49
MATR3-238	ENST00000512107	COL4A5	P29400	1685 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	EYA2	O00167	538 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	NFKBIE	O00221	500 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	SASH1	O94885	1247 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	IGHMBP2	P38935	993 aa	Known RBP	18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	RASSF7	Q02833	373 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	CHRND	Q07001	517 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	LDHAL6A	Q6ZMR3	332 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	VGLL2	Q8N8G2	317 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	HDAC5	Q9UQL6	1122 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	EXOC6B	Q9Y2D4	811 aa		18.13	■□□□□ 0.49
MATR3-238	ENST00000512107	KLRK1	P26718	216 aa		18.12	■□□□□ 0.49
MATR3-238	ENST00000512107	TAF7L	Q5H9L4	462 aa		18.12	■□□□□ 0.49
MATR3-238	ENST00000512107	POLL	Q9UGP5	575 aa		18.12	■□□□□ 0.49
MATR3-238	ENST00000512107	NOP58	Q9Y2X3	529 aa	Known RBP	18.12	■□□□□ 0.49
MATR3-238	ENST00000512107	MPHOSPH8	Q99549	860 aa		18.11	■□□□□ 0.49
MATR3-238	ENST00000512107	CHMP4B	Q9H444	224 aa	Known RBP	18.11	■□□□□ 0.49
MATR3-238	ENST00000512107	CNNM1	Q9NRU3	951 aa		18.11	■□□□□ 0.49
MATR3-238	ENST00000512107	IRS2	Q9Y4H2	1338 aa		18.11	■□□□□ 0.49
MATR3-238	ENST00000512107	SURF6	O75683	361 aa	Known RBP	18.1	■□□□□ 0.49
MATR3-238	ENST00000512107	GOLGB1	Q14789	3259 aa	Known RBP	18.1	■□□□□ 0.49
MATR3-238	ENST00000512107	SBF1	O95248	1867 aa		18.09	■□□□□ 0.49
MATR3-238	ENST00000512107	CCDC88A	Q3V6T2	1871 aa		18.09	■□□□□ 0.49
MATR3-238	ENST00000512107	CIAO1	O76071	339 aa		18.09	■□□□□ 0.49
MATR3-238	ENST00000512107	TFCP2	Q12800	502 aa		18.09	■□□□□ 0.49
MATR3-238	ENST00000512107	TXNRD3	Q86VQ6	643 aa		18.09	■□□□□ 0.49
MATR3-238	ENST00000512107	GPR162	Q16538	588 aa		18.08	■□□□□ 0.48
MATR3-238	ENST00000512107	CCDC93	Q567U6	631 aa		18.08	■□□□□ 0.48
MATR3-238	ENST00000512107	TBC1D16	Q8TBP0	767 aa		18.08	■□□□□ 0.48
MATR3-238	ENST00000512107	DCTPP1	Q9H773	170 aa		18.08	■□□□□ 0.48
MATR3-238	ENST00000512107	NSFL1C	Q9UNZ2	370 aa	Known RBP	18.08	■□□□□ 0.48
MATR3-238	ENST00000512107	APBB1	O00213	710 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	SMARCA5	O60264	1052 aa	Predicted RBP	18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	FGFR2	P21802	821 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	HDAC1	Q13547	482 aa	Predicted RBP	18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	METTL24	Q5JXM2	366 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	ARHGAP27	Q6ZUM4	889 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	TMC4	Q7Z404	712 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	MPND	Q8N594	471 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	RTFDC1	Q9BY42	306 aa	Predicted RBP	18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	ZNF277	Q9NRM2	450 aa	Predicted RBP	18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	PODXL2	Q9NZ53	605 aa		18.07	■□□□□ 0.48
MATR3-238	ENST00000512107	IL15	P40933	162 aa	Predicted RBP	18.06	■□□□□ 0.48
MATR3-238	ENST00000512107	UFL1	O94874	794 aa		18.05	■□□□□ 0.48
MATR3-238	ENST00000512107	ADORA1	P30542	326 aa		18.05	■□□□□ 0.48
MATR3-238	ENST00000512107	FKBP4	Q02790	459 aa	Known RBP eCLIP	18.05	■□□□□ 0.48	8e-7	■■■□□ 16.6
MATR3-238	ENST00000512107	AAMP	Q13685	434 aa		18.05	■□□□□ 0.48
MATR3-238	ENST00000512107	DPP8	Q6V1X1	898 aa	Predicted RBP	18.05	■□□□□ 0.48
MATR3-238	ENST00000512107	XDH	P47989	1333 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	MROH5	Q6ZUA9	1318 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	ARAP2	Q8WZ64	1704 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	CHD4	Q14839	1912 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	PDE8B	O95263	885 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	G3BP1	Q13283	466 aa	Known RBP eCLIP	18.04	■□□□□ 0.48	4e-8	■■□□□ 12.9
MATR3-238	ENST00000512107	IL1RAPL2	Q9NP60	686 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	ANKIB1	Q9P2G1	1089 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	FBXO3	Q9UK99	471 aa		18.04	■□□□□ 0.48
MATR3-238	ENST00000512107	ZNF804B	A4D1E1	1349 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	RIMBP2	O15034	1052 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	HMMR	O75330	724 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	TIMM10	P62072	90 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	CC2D2B	Q6DHV5	1058 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	RTKN2	Q8IZC4	609 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	RHPN1	Q8TCX5	695 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	PSMD1	Q99460	953 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	TLR7	Q9NYK1	1049 aa	Known RBP	18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	GGA1	Q9UJY5	639 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	ZNF609	O15014	1411 aa		18.03	■□□□□ 0.48
MATR3-238	ENST00000512107	ZNF646	O15015	1829 aa	Predicted RBP	18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	C6orf229	H3BNL8	230 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	NEFL	P07196	543 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	ATP2B4	P23634	1241 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	AOC3	Q16853	763 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	EAF2	Q96CJ1	260 aa	Predicted RBP	18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	ANKRD2	Q9GZV1	360 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	CEP126	Q9P2H0	1117 aa		18.02	■□□□□ 0.48
MATR3-238	ENST00000512107	KDM2B	Q8NHM5	1336 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	LTBP3	Q9NS15	1303 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	SCN9A	Q15858	1988 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	C1QTNF8	P60827	252 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	B4GALNT3	Q6L9W6	998 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	SKAP1	Q86WV1	359 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	SMC5	Q8IY18	1101 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	C16orf71	Q8IYS4	520 aa	Predicted RBP	18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	ZNF784	Q8NCA9	323 aa	Predicted RBP	18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	TAOK3	Q9H2K8	898 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	KCNQ5	Q9NR82	932 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	LEMD3	Q9Y2U8	911 aa		18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	DICER1	Q9UPY3	1922 aa	Known RBP	18.01	■□□□□ 0.47
MATR3-238	ENST00000512107	GYG1	P46976	350 aa		18	■□□□□ 0.47
MATR3-238	ENST00000512107	OS9	Q13438	667 aa	Predicted RBP	18	■□□□□ 0.47
MATR3-238	ENST00000512107	DOK7	Q18PE1	504 aa		18	■□□□□ 0.47

Retrieved 100 of 20,778 RNA–protein pairs in 47.3 ms