RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 CCDC93Q567U6 631 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 HDGFL1Q5TGJ6 251 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 DUSP27Q5VZP5 1158 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 ANKRD13DQ6ZTN6 518 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 NUTM1Q86Y26 1132 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 C16orf71Q8IYS4 520 aaPredicted RBP10.36□□□□□ -0.75
SCN1A-207ENST00000507401 XAGE3Q8WTP9 111 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 NLRP3Q96P20 1036 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 CRAMP1Q96RY5 1269 aa10.36□□□□□ -0.75
SCN1A-207ENST00000507401 UTP14AQ9BVJ6 771 aaKnown RBP10.36□□□□□ -0.75
SCN1A-207ENST00000507401 DICER1Q9UPY3 1922 aaKnown RBP10.36□□□□□ -0.75
SCN1A-207ENST00000507401 ANP32CO43423 234 aa10.35□□□□□ -0.75
SCN1A-207ENST00000507401 ANXA1P04083 346 aa10.35□□□□□ -0.75
SCN1A-207ENST00000507401 FKBP4Q02790 459 aaKnown RBP eCLIP10.35□□□□□ -0.75
SCN1A-207ENST00000507401 AIMP1Q12904 312 aaKnown RBP10.35□□□□□ -0.75
SCN1A-207ENST00000507401 PLBD2Q8NHP8 589 aa10.35□□□□□ -0.75
SCN1A-207ENST00000507401 NECTIN2Q92692 538 aa10.35□□□□□ -0.75
SCN1A-207ENST00000507401 RPGRQ92834 1020 aaKnown RBP10.35□□□□□ -0.75
SCN1A-207ENST00000507401 RBM17Q96I25 401 aaKnown RBP10.35□□□□□ -0.75
SCN1A-207ENST00000507401 CHPF2Q9P2E5 772 aa10.35□□□□□ -0.75
SCN1A-207ENST00000507401 TRIM28Q13263 835 aaKnown RBP10.34□□□□□ -0.75
SCN1A-207ENST00000507401 CCDC184Q52MB2 194 aa10.34□□□□□ -0.75
SCN1A-207ENST00000507401 NLRP10Q86W26 655 aa10.34□□□□□ -0.75
SCN1A-207ENST00000507401 SPRYD3Q8NCJ5 442 aa10.34□□□□□ -0.75
SCN1A-207ENST00000507401 PSMD1Q99460 953 aa10.34□□□□□ -0.75
SCN1A-207ENST00000507401 TBC1D12O60347 775 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 BBOX1O75936 387 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 APLP1P51693 650 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 EMILIN3Q9NT22 766 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 ABCC12Q96J65 1359 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 TNRC6CQ9HCJ0 1690 aaKnown RBP10.33□□□□□ -0.76
SCN1A-207ENST00000507401 SH3TC1Q8TE82 1336 aa10.33□□□□□ -0.76
SCN1A-207ENST00000507401 CACNA1SQ13698 1873 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 POTECB2RU33 542 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 WWC1Q8IX03 1113 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 SYNE4Q8N205 404 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 SMC1BQ8NDV3 1235 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 ISCA1Q9BUE6 129 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 TMX4Q9H1E5 349 aaPredicted RBP10.32□□□□□ -0.76
SCN1A-207ENST00000507401 VPS33BQ9H267 617 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 MRS2Q9HD23 443 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 TRMT112Q9UI30 125 aaKnown RBP10.32□□□□□ -0.76
SCN1A-207ENST00000507401 CEP350Q5VT06 3117 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 IL16Q14005 1332 aa10.32□□□□□ -0.76
SCN1A-207ENST00000507401 IARSP41252 1262 aaKnown RBP10.31□□□□□ -0.76
SCN1A-207ENST00000507401 CCDC30Q5VVM6 783 aa10.31□□□□□ -0.76
SCN1A-207ENST00000507401 C8orf58Q8NAV2 365 aa10.31□□□□□ -0.76
SCN1A-207ENST00000507401 ATP6V0A2Q9Y487 856 aa10.31□□□□□ -0.76
SCN1A-207ENST00000507401 RBM19Q9Y4C8 960 aaKnown RBP10.31□□□□□ -0.76
SCN1A-207ENST00000507401 ANKRD36CQ5JPF3 1778 aa10.31□□□□□ -0.76
SCN1A-207ENST00000507401 TIAM2Q8IVF5 1701 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 WDR90Q96KV7 1748 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 CCER2I3L3R5 266 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 FZD9O00144 591 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 ELL2O00472 640 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-207ENST00000507401 PPEF1O14829 653 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-207ENST00000507401 HSP90B1P14625 803 aaKnown RBP10.3□□□□□ -0.76
SCN1A-207ENST00000507401 PBX2P40425 430 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 OLFM4Q6UX06 510 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 TMC4Q7Z404 712 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 RIC3Q7Z5B4 369 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 WDR63Q8IWG1 891 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 SP8Q8IXZ3 490 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 JDP2Q8WYK2 163 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 ZNF277Q9NRM2 450 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-207ENST00000507401 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.3□□□□□ -0.76
SCN1A-207ENST00000507401 SNED1Q8TER0 1413 aa10.3□□□□□ -0.76
SCN1A-207ENST00000507401 IQCA1LA6NCM1 817 aa10.29□□□□□ -0.76
SCN1A-207ENST00000507401 DDNO94850 711 aaPredicted RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 DDX58O95786 925 aaKnown RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 PRKCSHP14314 528 aaPredicted RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 HCLS1P14317 486 aaPredicted RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 CAMK2BQ13554 666 aa10.29□□□□□ -0.76
SCN1A-207ENST00000507401 SF3B3Q15393 1217 aaKnown RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 DDX46Q7L014 1031 aaKnown RBP10.29□□□□□ -0.76
SCN1A-207ENST00000507401 DNAJC5GQ8N7S2 189 aa10.29□□□□□ -0.76
SCN1A-207ENST00000507401 LSM11P83369 360 aaKnown RBP eCLIP10.28□□□□□ -0.76
SCN1A-207ENST00000507401 GPC2Q8N158 579 aa10.28□□□□□ -0.76
SCN1A-207ENST00000507401 CCDC191Q8NCU4 936 aa10.28□□□□□ -0.76
SCN1A-207ENST00000507401 SUPT20HQ8NEM7 779 aa10.28□□□□□ -0.76
SCN1A-207ENST00000507401 FAM89AQ96GI7 184 aa10.28□□□□□ -0.76
SCN1A-207ENST00000507401 RTFDC1Q9BY42 306 aaPredicted RBP10.28□□□□□ -0.76
SCN1A-207ENST00000507401 PHAXQ9H814 394 aaKnown RBP10.28□□□□□ -0.76
SCN1A-207ENST00000507401 ABCC4O15439 1325 aa10.28□□□□□ -0.76
SCN1A-207ENST00000507401 ATP5J2-PTCD1G3V325 749 aa10.27□□□□□ -0.77
SCN1A-207ENST00000507401 GRAPQ13588 217 aa10.27□□□□□ -0.77
SCN1A-207ENST00000507401 KSR2Q6VAB6 950 aa10.27□□□□□ -0.77
SCN1A-207ENST00000507401 PAXIP1Q6ZW49 1069 aaPredicted RBP10.27□□□□□ -0.77
SCN1A-207ENST00000507401 TSPYL6Q8N831 410 aa10.27□□□□□ -0.77
SCN1A-207ENST00000507401 ZBTB38Q8NAP3 1195 aaPredicted RBP10.27□□□□□ -0.77
SCN1A-207ENST00000507401 GRAPLQ8TC17 118 aaPredicted RBP10.27□□□□□ -0.77
SCN1A-207ENST00000507401 METTL22Q9BUU2 404 aaPredicted RBP10.27□□□□□ -0.77
SCN1A-207ENST00000507401 SCN4AP35499 1836 aa10.27□□□□□ -0.77
SCN1A-207ENST00000507401 TCERG1O14776 1098 aaKnown RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 EIF6P56537 245 aaKnown RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 TWISTNBQ3B726 338 aaPredicted RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 PNMA8AQ86V59 439 aaPredicted RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 LARGE2Q8N3Y3 721 aa10.26□□□□□ -0.77
SCN1A-207ENST00000507401 TSR2Q969E8 191 aaKnown RBP10.26□□□□□ -0.77
SCN1A-207ENST00000507401 STK31Q9BXU1 1019 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms