RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 MUC3BQ9H195 1237 aa9.05□□□□□ -0.96
VPS50-219ENST00000495039 RFX1P22670 979 aa9.04□□□□□ -0.96
VPS50-219ENST00000495039 CFAP70Q5T0N1 1121 aa9.04□□□□□ -0.96
VPS50-219ENST00000495039 NLRP13Q86W25 1043 aa9.04□□□□□ -0.96
VPS50-219ENST00000495039 PTCD1O75127 700 aaKnown RBP9.03□□□□□ -0.96
VPS50-219ENST00000495039 NOVA2Q9UNW9 492 aaKnown RBP9.03□□□□□ -0.96
VPS50-219ENST00000495039 TRIM33Q9UPN9 1127 aa9.03□□□□□ -0.96
VPS50-219ENST00000495039 GSC2O15499 205 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 GLB1P16278 677 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 SWI5Q1ZZU3 235 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 MCTP1Q6DN14 999 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 ETFBKMTQ8IXQ9 262 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 PPME1Q9Y570 386 aa9.02□□□□□ -0.97
VPS50-219ENST00000495039 BRD2P25440 801 aaKnown RBP9.01□□□□□ -0.97
VPS50-219ENST00000495039 SSTR4P31391 388 aa9.01□□□□□ -0.97
VPS50-219ENST00000495039 TRIP4Q15650 581 aaPredicted RBP9.01□□□□□ -0.97
VPS50-219ENST00000495039 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.01□□□□□ -0.97
VPS50-219ENST00000495039 AGGF1Q8N302 714 aaeCLIP9.01□□□□□ -0.97
VPS50-219ENST00000495039 FAM13BQ9NYF5 915 aa9.01□□□□□ -0.97
VPS50-219ENST00000495039 RAXQ9Y2V3 346 aa9.01□□□□□ -0.97
VPS50-219ENST00000495039 CD97P48960 835 aa9□□□□□ -0.97
VPS50-219ENST00000495039 C16orf46Q6P387 395 aa9□□□□□ -0.97
VPS50-219ENST00000495039 PRIMPOLQ96LW4 560 aa9□□□□□ -0.97
VPS50-219ENST00000495039 ACIN1Q9UKV3 1341 aaKnown RBP9□□□□□ -0.97
VPS50-219ENST00000495039 UBAP1LF5GYI3 381 aa8.99□□□□□ -0.97
VPS50-219ENST00000495039 CDCA8Q53HL2 280 aa8.99□□□□□ -0.97
VPS50-219ENST00000495039 OR13H1Q8NG92 308 aa8.99□□□□□ -0.97
VPS50-219ENST00000495039 PIK3R5Q8WYR1 880 aa8.99□□□□□ -0.97
VPS50-219ENST00000495039 SPACA7Q96KW9 195 aa8.99□□□□□ -0.97
VPS50-219ENST00000495039 PRMT3O60678 531 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 HYAL2Q12891 473 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 TMEM132AQ24JP5 1023 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 COL26A1Q96A83 441 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 CEP41Q9BYV8 373 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 SAP130Q9H0E3 1048 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 STOML1Q9UBI4 398 aa8.98□□□□□ -0.97
VPS50-219ENST00000495039 LINC01387J3KSC0 135 aa8.97□□□□□ -0.97
VPS50-219ENST00000495039 DHX15O43143 795 aaKnown RBP8.97□□□□□ -0.97
VPS50-219ENST00000495039 IGLV1-40P01703 118 aa8.97□□□□□ -0.97
VPS50-219ENST00000495039 OCLNQ16625 522 aa8.97□□□□□ -0.97
VPS50-219ENST00000495039 GALNT11Q8NCW6 608 aa8.97□□□□□ -0.97
VPS50-219ENST00000495039 GOLGA2P5Q9HBQ8 144 aa8.97□□□□□ -0.97
VPS50-219ENST00000495039 SMNDC1O75940 238 aaKnown RBP eCLIP8.96□□□□□ -0.98
VPS50-219ENST00000495039 CD68P34810 354 aaPredicted RBP8.96□□□□□ -0.98
VPS50-219ENST00000495039 ACAD11Q709F0 780 aa8.96□□□□□ -0.98
VPS50-219ENST00000495039 UBL7Q96S82 380 aaPredicted RBP8.96□□□□□ -0.98
VPS50-219ENST00000495039 LACRTQ9GZZ8 138 aa8.96□□□□□ -0.98
VPS50-219ENST00000495039 FNDC3AQ9Y2H6 1198 aaKnown RBP8.96□□□□□ -0.98
VPS50-219ENST00000495039 COL17A1Q9UMD9 1497 aaPredicted RBP8.96□□□□□ -0.98
VPS50-219ENST00000495039 COBLO75128 1261 aa8.95□□□□□ -0.98
VPS50-219ENST00000495039 CDC27P30260 824 aa8.95□□□□□ -0.98
VPS50-219ENST00000495039 ATP11AP98196 1134 aa8.95□□□□□ -0.98
VPS50-219ENST00000495039 UVSSAQ2YD98 709 aa8.95□□□□□ -0.98
VPS50-219ENST00000495039 TTC39BQ5VTQ0 682 aaPredicted RBP8.95□□□□□ -0.98
VPS50-219ENST00000495039 CEP135Q66GS9 1140 aa8.95□□□□□ -0.98
VPS50-219ENST00000495039 KIAA1324LA8MWY0 1029 aaPredicted RBP8.94□□□□□ -0.98
VPS50-219ENST00000495039 PAX4O43316 350 aa8.94□□□□□ -0.98
VPS50-219ENST00000495039 WISP1O95388 367 aa8.94□□□□□ -0.98
VPS50-219ENST00000495039 SCNN1AP37088 669 aa8.94□□□□□ -0.98
VPS50-219ENST00000495039 ELOAQ14241 798 aaKnown RBP8.94□□□□□ -0.98
VPS50-219ENST00000495039 COL13A1Q5TAT6 717 aaPredicted RBP8.94□□□□□ -0.98
VPS50-219ENST00000495039 TXNDC11Q6PKC3 985 aa8.94□□□□□ -0.98
VPS50-219ENST00000495039 TNFRSF10BO14763 440 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 TGFB1P01137 390 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 ZAP70P43403 619 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 FAM117BQ6P1L5 589 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 KRTAP19-1Q8IUB9 90 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 ARMC10Q8N2F6 343 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 UTP4Q969X6 686 aaKnown RBP8.93□□□□□ -0.98
VPS50-219ENST00000495039 ZMIZ1Q9ULJ6 1067 aa8.93□□□□□ -0.98
VPS50-219ENST00000495039 FAM177BA6PVY3 158 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 KIF4AO95239 1232 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 IRAK1P51617 712 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 FAM69CQ0P6D2 419 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 FAM26DQ5JW98 314 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 KLHL23Q8NBE8 558 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 MKNK1Q9BUB5 465 aa8.92□□□□□ -0.98
VPS50-219ENST00000495039 ZNF777Q9ULD5 760 aaPredicted RBP8.92□□□□□ -0.98
VPS50-219ENST00000495039 BTBD11A6QL63 1104 aa8.91□□□□□ -0.98
VPS50-219ENST00000495039 NFIAQ12857 509 aa8.91□□□□□ -0.98
VPS50-219ENST00000495039 RASSF4Q9H2L5 321 aa8.91□□□□□ -0.98
VPS50-219ENST00000495039 ABI2Q9NYB9 513 aaPredicted RBP8.91□□□□□ -0.98
VPS50-219ENST00000495039 CXXC1Q9P0U4 656 aaPredicted RBP8.91□□□□□ -0.98
VPS50-219ENST00000495039 FSCN2O14926 492 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 MED26O95402 600 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 CDC25BP30305 580 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 GRIK1P39086 918 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 DUOXA2Q1HG44 320 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 ZDHHC13Q8IUH4 622 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 GPR152Q8TDT2 470 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 STK32AQ8WU08 396 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 FAM46AQ96IP4 442 aaKnown RBP8.9□□□□□ -0.98
VPS50-219ENST00000495039 CARD10Q9BWT7 1032 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 PBX4Q9BYU1 374 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 KCNK4Q9NYG8 393 aa8.9□□□□□ -0.98
VPS50-219ENST00000495039 TM4SF5O14894 197 aa8.89□□□□□ -0.99
VPS50-219ENST00000495039 PTPRAP18433 802 aa8.89□□□□□ -0.99
VPS50-219ENST00000495039 NAA30Q147X3 362 aaPredicted RBP8.89□□□□□ -0.99
VPS50-219ENST00000495039 INTS5Q6P9B9 1019 aaKnown RBP8.89□□□□□ -0.99
VPS50-219ENST00000495039 ABTB2Q8N961 1025 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms