RNA–Protein interactions for RNA: ENST00000493695.1

SMC4-223, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 2

Gene SMC4, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-223ENST00000493695 PIK3R5Q8WYR1 880 aa9.2□□□□□ -0.94
SMC4-223ENST00000493695 LACRTQ9GZZ8 138 aa9.2□□□□□ -0.94
SMC4-223ENST00000493695 ACIN1Q9UKV3 1341 aaKnown RBP9.2□□□□□ -0.94
SMC4-223ENST00000493695 SCNN1AP37088 669 aa9.19□□□□□ -0.94
SMC4-223ENST00000493695 AGGF1Q8N302 714 aaeCLIP9.19□□□□□ -0.94
SMC4-223ENST00000493695 DCAF11Q8TEB1 546 aa9.19□□□□□ -0.94
SMC4-223ENST00000493695 FAM13BQ9NYF5 915 aa9.19□□□□□ -0.94
SMC4-223ENST00000493695 PTCD1O75127 700 aaKnown RBP9.18□□□□□ -0.94
SMC4-223ENST00000493695 TTC39BQ5VTQ0 682 aaPredicted RBP9.18□□□□□ -0.94
SMC4-223ENST00000493695 PCMTD2Q9NV79 361 aa9.18□□□□□ -0.94
SMC4-223ENST00000493695 PPME1Q9Y570 386 aa9.18□□□□□ -0.94
SMC4-223ENST00000493695 FAM177BA6PVY3 158 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 LINC01387J3KSC0 135 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 SOX18P35713 384 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 TRIP4Q15650 581 aaPredicted RBP9.17□□□□□ -0.94
SMC4-223ENST00000493695 CEP135Q66GS9 1140 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 TXNDC11Q6PKC3 985 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 STK32AQ8WU08 396 aa9.17□□□□□ -0.94
SMC4-223ENST00000493695 FNDC3AQ9Y2H6 1198 aaKnown RBP9.17□□□□□ -0.94
SMC4-223ENST00000493695 F8W735 103 aaPredicted RBP9.16□□□□□ -0.94
SMC4-223ENST00000493695 HYAL2Q12891 473 aa9.16□□□□□ -0.94
SMC4-223ENST00000493695 SETDB1Q15047 1291 aa9.16□□□□□ -0.94
SMC4-223ENST00000493695 MAP4K3Q8IVH8 894 aa9.16□□□□□ -0.94
SMC4-223ENST00000493695 ZMIZ1Q9ULJ6 1067 aa9.16□□□□□ -0.94
SMC4-223ENST00000493695 RNF112Q9ULX5 631 aa9.16□□□□□ -0.94
SMC4-223ENST00000493695 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP9.15□□□□□ -0.94
SMC4-223ENST00000493695 SMNDC1O75940 238 aaKnown RBP eCLIP9.15□□□□□ -0.94
SMC4-223ENST00000493695 FSTP19883 344 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 SSTR4P31391 388 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 ATP11AP98196 1134 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 CAPN12Q6ZSI9 719 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 GPR152Q8TDT2 470 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 MUC3BQ9H195 1237 aa9.15□□□□□ -0.94
SMC4-223ENST00000493695 SRA1Q9HD15 236 aaKnown RBP9.15□□□□□ -0.94
SMC4-223ENST00000493695 ZAP70P43403 619 aa9.14□□□□□ -0.95
SMC4-223ENST00000493695 OCLNQ16625 522 aa9.14□□□□□ -0.95
SMC4-223ENST00000493695 DZIP1LQ8IYY4 767 aaKnown RBP9.14□□□□□ -0.95
SMC4-223ENST00000493695 TMEM130Q8N3G9 435 aa9.14□□□□□ -0.95
SMC4-223ENST00000493695 FAM117BQ6P1L5 589 aa9.13□□□□□ -0.95
SMC4-223ENST00000493695 NCAPG2Q86XI2 1143 aa9.13□□□□□ -0.95
SMC4-223ENST00000493695 OR13H1Q8NG92 308 aa9.13□□□□□ -0.95
SMC4-223ENST00000493695 CXXC1Q9P0U4 656 aaPredicted RBP9.13□□□□□ -0.95
SMC4-223ENST00000493695 CDC27P30260 824 aa9.12□□□□□ -0.95
SMC4-223ENST00000493695 FAM26DQ5JW98 314 aa9.12□□□□□ -0.95
SMC4-223ENST00000493695 COL13A1Q5TAT6 717 aaPredicted RBP9.12□□□□□ -0.95
SMC4-223ENST00000493695 ACAD11Q709F0 780 aa9.12□□□□□ -0.95
SMC4-223ENST00000493695 CACTIN-AS1Q8N1I8 211 aa9.12□□□□□ -0.95
SMC4-223ENST00000493695 CARD10Q9BWT7 1032 aa9.12□□□□□ -0.95
SMC4-223ENST00000493695 ELOAQ14241 798 aaKnown RBP9.11□□□□□ -0.95
SMC4-223ENST00000493695 RASSF4Q9H2L5 321 aa9.11□□□□□ -0.95
SMC4-223ENST00000493695 STIM2Q9P246 746 aa9.11□□□□□ -0.95
SMC4-223ENST00000493695 STOML1Q9UBI4 398 aa9.11□□□□□ -0.95
SMC4-223ENST00000493695 HOXD8P13378 290 aaPredicted RBP9.1□□□□□ -0.95
SMC4-223ENST00000493695 CD68P34810 354 aaPredicted RBP9.1□□□□□ -0.95
SMC4-223ENST00000493695 GALNT11Q8NCW6 608 aa9.1□□□□□ -0.95
SMC4-223ENST00000493695 COL26A1Q96A83 441 aa9.1□□□□□ -0.95
SMC4-223ENST00000493695 ABI2Q9NYB9 513 aaPredicted RBP9.1□□□□□ -0.95
SMC4-223ENST00000493695 RAXQ9Y2V3 346 aa9.1□□□□□ -0.95
SMC4-223ENST00000493695 TNFRSF10BO14763 440 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 FAM69CQ0P6D2 419 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 TMEM164Q5U3C3 297 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.09□□□□□ -0.95
SMC4-223ENST00000493695 ABTB2Q8N961 1025 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 KRTAP9-2Q9BYQ4 174 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 CEP41Q9BYV8 373 aa9.09□□□□□ -0.95
SMC4-223ENST00000493695 DHX15O43143 795 aaKnown RBP9.08□□□□□ -0.96
SMC4-223ENST00000493695 DUOXA2Q1HG44 320 aa9.08□□□□□ -0.96
SMC4-223ENST00000493695 TTC16Q8NEE8 873 aa9.08□□□□□ -0.96
SMC4-223ENST00000493695 UTP4Q969X6 686 aaKnown RBP9.08□□□□□ -0.96
SMC4-223ENST00000493695 SH2B1Q9NRF2 756 aaPredicted RBP9.08□□□□□ -0.96
SMC4-223ENST00000493695 KRTAP9-1A8MXZ3 250 aaPredicted RBP9.07□□□□□ -0.96
SMC4-223ENST00000493695 WISP1O95388 367 aa9.07□□□□□ -0.96
SMC4-223ENST00000493695 CYP2E1P05181 493 aaPredicted RBP9.07□□□□□ -0.96
SMC4-223ENST00000493695 ZNF438Q7Z4V0 828 aa9.07□□□□□ -0.96
SMC4-223ENST00000493695 UBL7Q96S82 380 aaPredicted RBP9.07□□□□□ -0.96
SMC4-223ENST00000493695 FSCN2O14926 492 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 ZBTB39O15060 712 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 GSC2O15499 205 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 SART1O43290 800 aaKnown RBP9.06□□□□□ -0.96
SMC4-223ENST00000493695 PTPRAP18433 802 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 SLC51AQ86UW1 340 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 KCNK4Q9NYG8 393 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 KANSL3Q9P2N6 904 aa9.06□□□□□ -0.96
SMC4-223ENST00000493695 IGLV1-40P01703 118 aa9.05□□□□□ -0.96
SMC4-223ENST00000493695 CABP4P57796 275 aa9.05□□□□□ -0.96
SMC4-223ENST00000493695 ATCAYQ86WG3 371 aa9.05□□□□□ -0.96
SMC4-223ENST00000493695 NUDT16Q96DE0 195 aaKnown RBP9.05□□□□□ -0.96
SMC4-223ENST00000493695 PBX4Q9BYU1 374 aa9.05□□□□□ -0.96
SMC4-223ENST00000493695 ELP3Q9H9T3 547 aa9.05□□□□□ -0.96
SMC4-223ENST00000493695 KRTAP9-6A0A140TA67 174 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 DDX3YO15523 660 aaKnown RBP9.04□□□□□ -0.96
SMC4-223ENST00000493695 ATG7O95352 703 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 EPHA1P21709 976 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 SLC7A3Q8WY07 619 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 KCNF1Q9H3M0 494 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 TMEM63CQ9P1W3 806 aa9.04□□□□□ -0.96
SMC4-223ENST00000493695 TGFB1P01137 390 aa9.03□□□□□ -0.96
SMC4-223ENST00000493695 PCSK2P16519 638 aa9.03□□□□□ -0.96
SMC4-223ENST00000493695 ATP2B4P23634 1241 aa9.03□□□□□ -0.96
SMC4-223ENST00000493695 C8orf34Q49A92 452 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms