RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 EXOC6BQ9Y2D4 811 aa17.18■□□□□ 0.34
C9orf3-221ENST00000489562 A0A0G2JLW4 131 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 PPEF1O14829 653 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-221ENST00000489562 B4GALNT3Q6L9W6 998 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 KIF1BPQ96EK5 621 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 FHDC1Q9C0D6 1143 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-221ENST00000489562 TMX4Q9H1E5 349 aaPredicted RBP17.17■□□□□ 0.34
C9orf3-221ENST00000489562 PIM2Q9P1W9 311 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 RIPOR2Q9Y4F9 1068 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 KDM2BQ8NHM5 1336 aa17.17■□□□□ 0.34
C9orf3-221ENST00000489562 KCNA3P22001 575 aa17.16■□□□□ 0.34
C9orf3-221ENST00000489562 LRRC24Q50LG9 513 aa17.16■□□□□ 0.34
C9orf3-221ENST00000489562 PRPF40BQ6NWY9 871 aaKnown RBP17.16■□□□□ 0.34
C9orf3-221ENST00000489562 ATG9AQ7Z3C6 839 aa17.16■□□□□ 0.34
C9orf3-221ENST00000489562 SP8Q8IXZ3 490 aa17.16■□□□□ 0.34
C9orf3-221ENST00000489562 PUS3Q9BZE2 481 aaKnown RBP17.16■□□□□ 0.34
C9orf3-221ENST00000489562 ZBTB47Q9UFB7 747 aaPredicted RBP17.16■□□□□ 0.34
C9orf3-221ENST00000489562 ATP6V0A2Q9Y487 856 aa17.16■□□□□ 0.34
C9orf3-221ENST00000489562 METTL24Q5JXM2 366 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 CC2D2BQ6DHV5 1058 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 LRRCC1Q9C099 1032 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 ANKRD2Q9GZV1 360 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 CEP126Q9P2H0 1117 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 LTBP1Q14766 1721 aa17.15■□□□□ 0.34
C9orf3-221ENST00000489562 ARAP2Q8WZ64 1704 aa17.14■□□□□ 0.33
C9orf3-221ENST00000489562 GRIPAP1Q4V328 841 aa17.14■□□□□ 0.33
C9orf3-221ENST00000489562 SOGA3Q5TF21 947 aa17.14■□□□□ 0.33
C9orf3-221ENST00000489562 RHPN1Q8TCX5 695 aa17.14■□□□□ 0.33
C9orf3-221ENST00000489562 MINPP1Q9UNW1 487 aa17.14■□□□□ 0.33
C9orf3-221ENST00000489562 SASH1O94885 1247 aa17.13■□□□□ 0.33
C9orf3-221ENST00000489562 CHRNDQ07001 517 aa17.13■□□□□ 0.33
C9orf3-221ENST00000489562 DALRD3Q5D0E6 543 aaKnown RBP17.13■□□□□ 0.33
C9orf3-221ENST00000489562 SYT17Q9BSW7 474 aa17.13■□□□□ 0.33
C9orf3-221ENST00000489562 GPR108Q9NPR9 543 aa17.13■□□□□ 0.33
C9orf3-221ENST00000489562 AKAP2Q9Y2D5 859 aa17.13■□□□□ 0.33
C9orf3-221ENST00000489562 PDE8BO95263 885 aa17.12■□□□□ 0.33
C9orf3-221ENST00000489562 CLASRPQ8N2M8 674 aaKnown RBP17.12■□□□□ 0.33
C9orf3-221ENST00000489562 VGLL2Q8N8G2 317 aa17.12■□□□□ 0.33
C9orf3-221ENST00000489562 NLGN2Q8NFZ4 835 aa17.12■□□□□ 0.33
C9orf3-221ENST00000489562 XDHP47989 1333 aa17.12■□□□□ 0.33
C9orf3-221ENST00000489562 SRCAPQ6ZRS2 3230 aa17.12■□□□□ 0.33
C9orf3-221ENST00000489562 APBB1O00213 710 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 TFCP2Q12800 502 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 ANKRD45Q5TZF3 282 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 C7orf43Q8WVR3 580 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 PODXL2Q9NZ53 605 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 FER1L6Q2WGJ9 1857 aa17.11■□□□□ 0.33
C9orf3-221ENST00000489562 NUCB1Q02818 461 aa17.1■□□□□ 0.33
C9orf3-221ENST00000489562 UBE4AQ14139 1066 aa17.1■□□□□ 0.33
C9orf3-221ENST00000489562 PUM3Q15397 648 aaKnown RBP17.1■□□□□ 0.33
C9orf3-221ENST00000489562 ANKIB1Q9P2G1 1089 aa17.1■□□□□ 0.33
C9orf3-221ENST00000489562 LEMD3Q9Y2U8 911 aa17.1■□□□□ 0.33
C9orf3-221ENST00000489562 ZNF609O15014 1411 aa17.1■□□□□ 0.33
C9orf3-221ENST00000489562 ATP2B4P23634 1241 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 ATP2B3Q16720 1220 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 CCDC93Q567U6 631 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 CHD1LQ86WJ1 897 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 RTKN2Q8IZC4 609 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 MPNDQ8N594 471 aa17.09■□□□□ 0.33
C9orf3-221ENST00000489562 C21orf2O43822 256 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 KCNJ4P48050 445 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 TNNI3KQ59H18 835 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 HELBQ8NG08 1087 aaPredicted RBP17.08■□□□□ 0.32
C9orf3-221ENST00000489562 LPIN2Q92539 896 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 IL1RAPL2Q9NP60 686 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 GGA1Q9UJY5 639 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 NSFL1CQ9UNZ2 370 aaKnown RBP17.08■□□□□ 0.32
C9orf3-221ENST00000489562 FPGT-TNNI3KV9GXZ4 949 aa17.08■□□□□ 0.32
C9orf3-221ENST00000489562 DUOX1Q9NRD9 1551 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 SNED1Q8TER0 1413 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 ZNF804BA4D1E1 1349 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 TAF5LO75529 589 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 IFIT1P09914 478 aaKnown RBP17.07■□□□□ 0.32
C9orf3-221ENST00000489562 SLC5A1P13866 664 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 FGFR2P21802 821 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 GPSM2P81274 684 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 DPP8Q6V1X1 898 aaPredicted RBP17.07■□□□□ 0.32
C9orf3-221ENST00000489562 SUPT20HQ8NEM7 779 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 BCS1LQ9Y276 419 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 MYH13Q9UKX3 1938 aa17.07■□□□□ 0.32
C9orf3-221ENST00000489562 A0A1B0GUL7 405 aa17.06■□□□□ 0.32
C9orf3-221ENST00000489562 SMARCA5O60264 1052 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-221ENST00000489562 IFIT2P09913 472 aaKnown RBP17.06■□□□□ 0.32
C9orf3-221ENST00000489562 AACSQ86V21 672 aa17.06■□□□□ 0.32
C9orf3-221ENST00000489562 RTFDC1Q9BY42 306 aaPredicted RBP17.06■□□□□ 0.32
C9orf3-221ENST00000489562 LNPKQ9C0E8 428 aa17.06■□□□□ 0.32
C9orf3-221ENST00000489562 UFL1O94874 794 aa17.05■□□□□ 0.32
C9orf3-221ENST00000489562 C15orf52Q6ZUT6 534 aaKnown RBP17.05■□□□□ 0.32
C9orf3-221ENST00000489562 EAF2Q96CJ1 260 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-221ENST00000489562 PSMD1Q99460 953 aa17.05■□□□□ 0.32
C9orf3-221ENST00000489562 EYA3Q99504 573 aa17.05■□□□□ 0.32
C9orf3-221ENST00000489562 ZNF219Q9P2Y4 722 aaPredicted RBP17.05■□□□□ 0.32
C9orf3-221ENST00000489562 MED23Q9ULK4 1368 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 CHD4Q14839 1912 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 C6orf229H3BNL8 230 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 TBC1D16Q8TBP0 767 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 GPATCH3Q96I76 525 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 NEUROD6Q96NK8 337 aa17.04■□□□□ 0.32
C9orf3-221ENST00000489562 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP17.04■□□□□ 0.32
C9orf3-221ENST00000489562 CCDC88AQ3V6T2 1871 aa17.03■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms