RNA–Protein interactions for RNA: ENST00000489108.1

USP48-210, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 2

Gene USP48, Length 443 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-210ENST00000489108 DDX60Q8IY21 1712 aaKnown RBP21.24■□□□□ 0.99
USP48-210ENST00000489108 VIL1P09327 827 aaKnown RBP21.23■□□□□ 0.99
USP48-210ENST00000489108 TBC1D16Q8TBP0 767 aa21.23■□□□□ 0.99
USP48-210ENST00000489108 EYA3Q99504 573 aa21.23■□□□□ 0.99
USP48-210ENST00000489108 HPS5Q9UPZ3 1129 aa21.23■□□□□ 0.99
USP48-210ENST00000489108 COL4A1P02462 1669 aa21.22■□□□□ 0.99
USP48-210ENST00000489108 RIPK4P57078 832 aa21.22■□□□□ 0.99
USP48-210ENST00000489108 RASAL3Q86YV0 1011 aa21.22■□□□□ 0.99
USP48-210ENST00000489108 REM2Q8IYK8 340 aaPredicted RBP21.22■□□□□ 0.99
USP48-210ENST00000489108 BABAM1Q9NWV8 329 aa21.22■□□□□ 0.99
USP48-210ENST00000489108 SCN9AQ15858 1988 aa21.22■□□□□ 0.99
USP48-210ENST00000489108 SCARF1Q14162 830 aa21.21■□□□□ 0.99
USP48-210ENST00000489108 ZC3H12CQ9C0D7 883 aaKnown RBP21.21■□□□□ 0.99
USP48-210ENST00000489108 ATP5J2-PTCD1G3V325 749 aa21.2■□□□□ 0.98
USP48-210ENST00000489108 KRT24Q2M2I5 525 aa21.2■□□□□ 0.98
USP48-210ENST00000489108 RTL5Q5HYW3 569 aaPredicted RBP21.2■□□□□ 0.98
USP48-210ENST00000489108 ANGEL2Q5VTE6 544 aaKnown RBP21.2■□□□□ 0.98
USP48-210ENST00000489108 ISCA1Q9BUE6 129 aa21.2■□□□□ 0.98
USP48-210ENST00000489108 RPS8P62241 208 aaKnown RBP21.19■□□□□ 0.98
USP48-210ENST00000489108 PLBD2Q8NHP8 589 aa21.19■□□□□ 0.98
USP48-210ENST00000489108 HDAC9Q9UKV0 1011 aa21.19■□□□□ 0.98
USP48-210ENST00000489108 G3V3G9 751 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 TBC1D8O95759 1140 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 ZNF280AP59817 542 aaPredicted RBP21.18■□□□□ 0.98
USP48-210ENST00000489108 PKN2Q16513 984 aaKnown RBP21.18■□□□□ 0.98
USP48-210ENST00000489108 DCAF8Q5TAQ9 597 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 ANKRD13DQ6ZTN6 518 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 MOB2Q70IA6 237 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 CHPF2Q9P2E5 772 aa21.18■□□□□ 0.98
USP48-210ENST00000489108 ZNF296Q8WUU4 475 aaPredicted RBP21.17■□□□□ 0.98
USP48-210ENST00000489108 FKBP1BP68106 108 aa21.16■□□□□ 0.98
USP48-210ENST00000489108 RSBN1LQ6PCB5 846 aaPredicted RBP21.16■□□□□ 0.98
USP48-210ENST00000489108 PODXL2Q9NZ53 605 aa21.16■□□□□ 0.98
USP48-210ENST00000489108 SCAF8Q9UPN6 1271 aaKnown RBP21.16■□□□□ 0.98
USP48-210ENST00000489108 UBE2Q2LH0YL09 131 aa21.15■□□□□ 0.98
USP48-210ENST00000489108 IRS4O14654 1257 aaPredicted RBP21.15■□□□□ 0.98
USP48-210ENST00000489108 UFL1O94874 794 aa21.15■□□□□ 0.98
USP48-210ENST00000489108 AGBL3Q8NEM8 1001 aa21.15■□□□□ 0.98
USP48-210ENST00000489108 TMPOP42166 694 aaKnown RBP21.14■□□□□ 0.97
USP48-210ENST00000489108 SEC31BQ9NQW1 1179 aa21.14■□□□□ 0.97
USP48-210ENST00000489108 ANKIB1Q9P2G1 1089 aa21.14■□□□□ 0.97
USP48-210ENST00000489108 PAPPA2Q9BXP8 1791 aa21.13■□□□□ 0.97
USP48-210ENST00000489108 PRAMEF18Q5VWM3 479 aa21.13■□□□□ 0.97
USP48-210ENST00000489108 GMLQ99445 158 aa21.13■□□□□ 0.97
USP48-210ENST00000489108 MYOZ2Q9NPC6 264 aa21.13■□□□□ 0.97
USP48-210ENST00000489108 GGA1Q9UJY5 639 aa21.13■□□□□ 0.97
USP48-210ENST00000489108 CHL1O00533 1208 aa21.12■□□□□ 0.97
USP48-210ENST00000489108 USP17L8P0C7I0 530 aa21.12■□□□□ 0.97
USP48-210ENST00000489108 HDGFL1Q5TGJ6 251 aa21.12■□□□□ 0.97
USP48-210ENST00000489108 LAS1LQ9Y4W2 734 aaKnown RBP21.12■□□□□ 0.97
USP48-210ENST00000489108 PITPNM2Q9BZ72 1349 aa21.11■□□□□ 0.97
USP48-210ENST00000489108 GPR25O00155 361 aa21.11■□□□□ 0.97
USP48-210ENST00000489108 TM4SF4P48230 202 aa21.11■□□□□ 0.97
USP48-210ENST00000489108 LMOD3Q0VAK6 560 aa21.11■□□□□ 0.97
USP48-210ENST00000489108 TRIM28Q13263 835 aaKnown RBP21.11■□□□□ 0.97
USP48-210ENST00000489108 NEUROD2Q15784 382 aa21.1■□□□□ 0.97
USP48-210ENST00000489108 FBXO46Q6PJ61 603 aaPredicted RBP21.1■□□□□ 0.97
USP48-210ENST00000489108 DBF4Q9UBU7 674 aaPredicted RBP21.1■□□□□ 0.97
USP48-210ENST00000489108 ZNF609O15014 1411 aa21.1■□□□□ 0.97
USP48-210ENST00000489108 MKRN3Q13064 507 aaKnown RBP21.09■□□□□ 0.97
USP48-210ENST00000489108 TTLL12Q14166 644 aaPredicted RBP21.09■□□□□ 0.97
USP48-210ENST00000489108 PSME4Q14997 1843 aa21.08■□□□□ 0.97
USP48-210ENST00000489108 USP17L3A6NCW0 530 aa21.08■□□□□ 0.97
USP48-210ENST00000489108 USP17L4A6NCW7 530 aa21.08■□□□□ 0.97
USP48-210ENST00000489108 NBPF9Q3BBW0 867 aa21.08■□□□□ 0.97
USP48-210ENST00000489108 USP17L1Q7RTZ2 530 aa21.08■□□□□ 0.97
USP48-210ENST00000489108 ZBTB38Q8NAP3 1195 aaPredicted RBP21.08■□□□□ 0.97
USP48-210ENST00000489108 NOM1Q5C9Z4 860 aaKnown RBP21.07■□□□□ 0.96
USP48-210ENST00000489108 R3HDMLQ9H3Y0 253 aa21.07■□□□□ 0.96
USP48-210ENST00000489108 HYPKQ9NX55 129 aa21.07■□□□□ 0.96
USP48-210ENST00000489108 PODNQ7Z5L7 613 aa21.06■□□□□ 0.96
USP48-210ENST00000489108 JARID2Q92833 1246 aaPredicted RBP21.06■□□□□ 0.96
USP48-210ENST00000489108 CCDC85AQ96PX6 553 aaPredicted RBP21.06■□□□□ 0.96
USP48-210ENST00000489108 WTIPA6NIX2 430 aaPredicted RBP21.05■□□□□ 0.96
USP48-210ENST00000489108 FKTNO75072 461 aa21.05■□□□□ 0.96
USP48-210ENST00000489108 HOXB7P09629 217 aa21.05■□□□□ 0.96
USP48-210ENST00000489108 RIC3Q7Z5B4 369 aa21.05■□□□□ 0.96
USP48-210ENST00000489108 GCC1Q96CN9 775 aa21.05■□□□□ 0.96
USP48-210ENST00000489108 MXD3Q9BW11 206 aa21.05■□□□□ 0.96
USP48-210ENST00000489108 ATP2B4P23634 1241 aa21.04■□□□□ 0.96
USP48-210ENST00000489108 PTPN12Q05209 780 aaKnown RBP21.04■□□□□ 0.96
USP48-210ENST00000489108 CCDC152Q4G0S7 254 aa21.04■□□□□ 0.96
USP48-210ENST00000489108 CCDC146Q8IYE0 955 aa21.04■□□□□ 0.96
USP48-210ENST00000489108 TRIM35Q9UPQ4 493 aa21.04■□□□□ 0.96
USP48-210ENST00000489108 XDHP47989 1333 aa21.04■□□□□ 0.96
USP48-210ENST00000489108 HSP90B1P14625 803 aaKnown RBP21.03■□□□□ 0.96
USP48-210ENST00000489108 SREBF2Q12772 1141 aa21.03■□□□□ 0.96
USP48-210ENST00000489108 DUSP27Q5VZP5 1158 aa21.03■□□□□ 0.96
USP48-210ENST00000489108 WNT10BO00744 389 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 PDE8AO60658 829 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 NF2P35240 595 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 PRKG1Q13976 671 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 ANKRD18AQ8IVF6 992 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 MYD88Q99836 296 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 CFHR5Q9BXR6 569 aa21.02■□□□□ 0.96
USP48-210ENST00000489108 PCCAP05165 728 aaPredicted RBP21.01■□□□□ 0.95
USP48-210ENST00000489108 HABP4Q5JVS0 413 aaKnown RBP21.01■□□□□ 0.95
USP48-210ENST00000489108 DACT2Q5SW24 774 aa21.01■□□□□ 0.95
USP48-210ENST00000489108 PHAXQ9H814 394 aaKnown RBP21.01■□□□□ 0.95
USP48-210ENST00000489108 GOLGA2Q08379 1002 aa21■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms