RNA–Protein interactions for RNA: ENST00000488228.1

UBE4B-210, Transcript of ubiquitination factor E4B, humanhuman

TSL 3

Gene UBE4B, Length 560 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-210ENST00000488228 LTBP3Q9NS15 1303 aa13.82□□□□□ -0.2
UBE4B-210ENST00000488228 RFX5P48382 616 aaPredicted RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 DPP8Q6V1X1 898 aaPredicted RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 RTKN2Q8IZC4 609 aa13.81□□□□□ -0.2
UBE4B-210ENST00000488228 PUS3Q9BZE2 481 aaKnown RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 TMX4Q9H1E5 349 aaPredicted RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 ZNF277Q9NRM2 450 aaPredicted RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 BSDC1Q9NW68 430 aaPredicted RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 HDAC5Q9UQL6 1122 aa13.81□□□□□ -0.2
UBE4B-210ENST00000488228 SUPT16HQ9Y5B9 1047 aaKnown RBP13.81□□□□□ -0.2
UBE4B-210ENST00000488228 PNMA6EA0A0J9YXQ4 647 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 SRGAP3O43295 1099 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 MTX1Q13505 466 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 MPNDQ8N594 471 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 CRBNQ96SW2 442 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 PSMD1Q99460 953 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 CNNM1Q9NRU3 951 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 RNF181Q9P0P0 153 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 ANKIB1Q9P2G1 1089 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 NSFL1CQ9UNZ2 370 aaKnown RBP13.8□□□□□ -0.2
UBE4B-210ENST00000488228 PA2G4Q9UQ80 394 aaKnown RBP13.8□□□□□ -0.2
UBE4B-210ENST00000488228 XDHP47989 1333 aa13.8□□□□□ -0.2
UBE4B-210ENST00000488228 UFL1O94874 794 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 LMNB1P20700 586 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 CHRNDQ07001 517 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 LRRC24Q50LG9 513 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 C9orf131Q5VYM1 1079 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 LDHAL6AQ6ZMR3 332 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 SIL1Q9H173 461 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 ZBTB40Q9NUA8 1239 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 MINPP1Q9UNW1 487 aa13.79□□□□□ -0.2
UBE4B-210ENST00000488228 WTIPA6NIX2 430 aaPredicted RBP13.78□□□□□ -0.2
UBE4B-210ENST00000488228 PTPN12Q05209 780 aaKnown RBP13.78□□□□□ -0.2
UBE4B-210ENST00000488228 CEP85Q6P2H3 762 aa13.78□□□□□ -0.2
UBE4B-210ENST00000488228 HELBQ8NG08 1087 aaPredicted RBP13.78□□□□□ -0.2
UBE4B-210ENST00000488228 TBC1D16Q8TBP0 767 aa13.78□□□□□ -0.2
UBE4B-210ENST00000488228 POLLQ9UGP5 575 aa13.78□□□□□ -0.2
UBE4B-210ENST00000488228 C6orf229H3BNL8 230 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 PPIP5K2O43314 1243 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 TAF5LO75529 589 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 KLRK1P26718 216 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 IARSP41252 1262 aaKnown RBP13.77□□□□□ -0.21
UBE4B-210ENST00000488228 IRX6P78412 446 aaPredicted RBP13.77□□□□□ -0.21
UBE4B-210ENST00000488228 AOC3Q16853 763 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 GRIPAP1Q4V328 841 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 RTFDC1Q9BY42 306 aaPredicted RBP13.77□□□□□ -0.21
UBE4B-210ENST00000488228 PODXL2Q9NZ53 605 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 GGA1Q9UJY5 639 aa13.77□□□□□ -0.21
UBE4B-210ENST00000488228 SNAP23O00161 211 aa13.76□□□□□ -0.21
UBE4B-210ENST00000488228 EYA2O00167 538 aa13.76□□□□□ -0.21
UBE4B-210ENST00000488228 MED23Q9ULK4 1368 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 RIMBP2O15034 1052 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 POLA2Q14181 598 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 METTL24Q5JXM2 366 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 ATG9AQ7Z3C6 839 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 LARGE2Q8N3Y3 721 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 SUPT20HQ8NEM7 779 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 ANKRD2Q9GZV1 360 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 COPRSQ9NQ92 184 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 RIPOR2Q9Y4F9 1068 aa13.75□□□□□ -0.21
UBE4B-210ENST00000488228 ZNF804BA4D1E1 1349 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 MROH5Q6ZUA9 1318 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 ZNF541Q9H0D2 1346 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 KCNJ4P48050 445 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 ATP8B2P98198 1209 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 KIAA2012Q0VF49 1180 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 VGLL2Q8N8G2 317 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 SSH3Q8TE77 659 aa13.74□□□□□ -0.21
UBE4B-210ENST00000488228 CHMP4BQ9H444 224 aaKnown RBP13.74□□□□□ -0.21
UBE4B-210ENST00000488228 ZNF609O15014 1411 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 WDR90Q96KV7 1748 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 CIAO1O76071 339 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 ATP2B4P23634 1241 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 WASHC4Q2M389 1173 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 SIRT2Q8IXJ6 389 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 NIM1KQ8IY84 436 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 EXOC6Q8TAG9 804 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 EYA3Q99504 573 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 DBNDD1Q9H9R9 158 aa13.73□□□□□ -0.21
UBE4B-210ENST00000488228 IRS2Q9Y4H2 1338 aa13.72□□□□□ -0.21
UBE4B-210ENST00000488228 YY1P25490 414 aa13.72□□□□□ -0.21
UBE4B-210ENST00000488228 DOK7Q18PE1 504 aa13.72□□□□□ -0.21
UBE4B-210ENST00000488228 TXNRD3Q86VQ6 643 aa13.72□□□□□ -0.21
UBE4B-210ENST00000488228 LEMD3Q9Y2U8 911 aa13.72□□□□□ -0.21
UBE4B-210ENST00000488228 ADAMTSL1Q8N6G6 1762 aa13.71□□□□□ -0.21
UBE4B-210ENST00000488228 ZC3H4Q9UPT8 1303 aaKnown RBP13.71□□□□□ -0.21
UBE4B-210ENST00000488228 ECE2O60344 883 aa13.71□□□□□ -0.21
UBE4B-210ENST00000488228 IL15P40933 162 aaPredicted RBP13.71□□□□□ -0.21
UBE4B-210ENST00000488228 ZNF526Q8TF50 670 aaPredicted RBP13.71□□□□□ -0.21
UBE4B-210ENST00000488228 JDP2Q8WYK2 163 aa13.71□□□□□ -0.21
UBE4B-210ENST00000488228 FBXO3Q9UK99 471 aa13.71□□□□□ -0.21
UBE4B-210ENST00000488228 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP13.71□□□□□ -0.21
UBE4B-210ENST00000488228 SCN4AP35499 1836 aa13.71□□□□□ -0.22
UBE4B-210ENST00000488228 YDJCA8MPS7 323 aa13.7□□□□□ -0.22
UBE4B-210ENST00000488228 SURF6O75683 361 aaKnown RBP13.7□□□□□ -0.22
UBE4B-210ENST00000488228 PDE8BO95263 885 aa13.7□□□□□ -0.22
UBE4B-210ENST00000488228 TFCP2Q12800 502 aa13.7□□□□□ -0.22
UBE4B-210ENST00000488228 OS9Q13438 667 aaPredicted RBP13.7□□□□□ -0.22
UBE4B-210ENST00000488228 PUM3Q15397 648 aaKnown RBP13.7□□□□□ -0.22
UBE4B-210ENST00000488228 RPAP2Q8IXW5 612 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms