RNA–Protein interactions for RNA: ENST00000469054.1

VPS13D-204, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 3

Gene VPS13D, Length 567 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-204ENST00000469054 GPSM2P81274 684 aa14.94□□□□□ -0.02
VPS13D-204ENST00000469054 C9orf131Q5VYM1 1079 aa14.94□□□□□ -0.02
VPS13D-204ENST00000469054 LDHAL6AQ6ZMR3 332 aa14.94□□□□□ -0.02
VPS13D-204ENST00000469054 RTFDC1Q9BY42 306 aaPredicted RBP14.94□□□□□ -0.02
VPS13D-204ENST00000469054 ZNF277Q9NRM2 450 aaPredicted RBP14.94□□□□□ -0.02
VPS13D-204ENST00000469054 FOXD4L1Q9NU39 408 aa14.94□□□□□ -0.02
VPS13D-204ENST00000469054 RFX5P48382 616 aaPredicted RBP14.93□□□□□ -0.02
VPS13D-204ENST00000469054 MTX1Q13505 466 aa14.93□□□□□ -0.02
VPS13D-204ENST00000469054 SUPT20HQ8NEM7 779 aa14.93□□□□□ -0.02
VPS13D-204ENST00000469054 CHMP4BQ9H444 224 aaKnown RBP14.93□□□□□ -0.02
VPS13D-204ENST00000469054 PODXL2Q9NZ53 605 aa14.93□□□□□ -0.02
VPS13D-204ENST00000469054 RNF181Q9P0P0 153 aa14.93□□□□□ -0.02
VPS13D-204ENST00000469054 ANKIB1Q9P2G1 1089 aa14.93□□□□□ -0.02
VPS13D-204ENST00000469054 IARSP41252 1262 aaKnown RBP14.92□□□□□ -0.02
VPS13D-204ENST00000469054 CHRNDQ07001 517 aa14.92□□□□□ -0.02
VPS13D-204ENST00000469054 C1orf115Q9H7X2 142 aa14.92□□□□□ -0.02
VPS13D-204ENST00000469054 CNNM1Q9NRU3 951 aa14.92□□□□□ -0.02
VPS13D-204ENST00000469054 POLLQ9UGP5 575 aa14.92□□□□□ -0.02
VPS13D-204ENST00000469054 XDHP47989 1333 aa14.92□□□□□ -0.02
VPS13D-204ENST00000469054 SRGAP3O43295 1099 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 PTPN12Q05209 780 aaKnown RBP14.91□□□□□ -0.02
VPS13D-204ENST00000469054 KLHDC4Q8TBB5 520 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 TBC1D16Q8TBP0 767 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 ANKRD2Q9GZV1 360 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 VPS33BQ9H267 617 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 ZBTB40Q9NUA8 1239 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 GGA1Q9UJY5 639 aa14.91□□□□□ -0.02
VPS13D-204ENST00000469054 C6orf229H3BNL8 230 aa14.9□□□□□ -0.02
VPS13D-204ENST00000469054 ATP2B4P23634 1241 aa14.9□□□□□ -0.02
VPS13D-204ENST00000469054 ATP8B2P98198 1209 aa14.9□□□□□ -0.02
VPS13D-204ENST00000469054 PUS3Q9BZE2 481 aaKnown RBP14.9□□□□□ -0.02
VPS13D-204ENST00000469054 RIPOR2Q9Y4F9 1068 aa14.9□□□□□ -0.02
VPS13D-204ENST00000469054 SUPT16HQ9Y5B9 1047 aaKnown RBP14.9□□□□□ -0.02
VPS13D-204ENST00000469054 TAF1P21675 1872 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 PNMA6EA0A0J9YXQ4 647 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 EYA2O00167 538 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 PPIP5K2O43314 1243 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 UFL1O94874 794 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 YY1P25490 414 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 LRRC24Q50LG9 513 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 LARGE2Q8N3Y3 721 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 EYA3Q99504 573 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 COPRSQ9NQ92 184 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 LEMD3Q9Y2U8 911 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 MYH3P11055 1940 aa14.89□□□□□ -0.03
VPS13D-204ENST00000469054 TAF5LO75529 589 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 KIAA2012Q0VF49 1180 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 AOC3Q16853 763 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 WASHC4Q2M389 1173 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 HELBQ8NG08 1087 aaPredicted RBP14.88□□□□□ -0.03
VPS13D-204ENST00000469054 JDP2Q8WYK2 163 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 FBXO3Q9UK99 471 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 PA2G4Q9UQ80 394 aaKnown RBP14.88□□□□□ -0.03
VPS13D-204ENST00000469054 CACNA1SQ13698 1873 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 MROH5Q6ZUA9 1318 aa14.88□□□□□ -0.03
VPS13D-204ENST00000469054 ZC3H4Q9UPT8 1303 aaKnown RBP14.88□□□□□ -0.03
VPS13D-204ENST00000469054 FER1L6Q2WGJ9 1857 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 WTIPA6NIX2 430 aaPredicted RBP14.87□□□□□ -0.03
VPS13D-204ENST00000469054 CIAO1O76071 339 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 POLA2Q14181 598 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 CEP85Q6P2H3 762 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 SSH3Q8TE77 659 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 ZC3H12CQ9C0D7 883 aaKnown RBP14.87□□□□□ -0.03
VPS13D-204ENST00000469054 SIL1Q9H173 461 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 ZNF804BA4D1E1 1349 aa14.87□□□□□ -0.03
VPS13D-204ENST00000469054 RIMBP2O15034 1052 aa14.86□□□□□ -0.03
VPS13D-204ENST00000469054 KCNJ4P48050 445 aa14.86□□□□□ -0.03
VPS13D-204ENST00000469054 C1QBPQ07021 282 aaKnown RBP14.86□□□□□ -0.03
VPS13D-204ENST00000469054 METTL24Q5JXM2 366 aa14.86□□□□□ -0.03
VPS13D-204ENST00000469054 RPAP2Q8IXW5 612 aaPredicted RBP14.86□□□□□ -0.03
VPS13D-204ENST00000469054 NIM1KQ8IY84 436 aa14.86□□□□□ -0.03
VPS13D-204ENST00000469054 GPR101Q96P66 508 aaPredicted RBP14.86□□□□□ -0.03
VPS13D-204ENST00000469054 LRRC37AA6NMS7 1700 aa14.86□□□□□ -0.03
VPS13D-204ENST00000469054 FZD9O00144 591 aa14.85□□□□□ -0.03
VPS13D-204ENST00000469054 SNAP23O00161 211 aa14.85□□□□□ -0.03
VPS13D-204ENST00000469054 IL15P40933 162 aaPredicted RBP14.85□□□□□ -0.03
VPS13D-204ENST00000469054 ATG9AQ7Z3C6 839 aa14.85□□□□□ -0.03
VPS13D-204ENST00000469054 CRBNQ96SW2 442 aa14.85□□□□□ -0.03
VPS13D-204ENST00000469054 DUOX1Q9NRD9 1551 aa14.85□□□□□ -0.03
VPS13D-204ENST00000469054 PDE8BO95263 885 aa14.84□□□□□ -0.03
VPS13D-204ENST00000469054 UBE4AQ14139 1066 aa14.84□□□□□ -0.03
VPS13D-204ENST00000469054 VGLL2Q8N8G2 317 aa14.84□□□□□ -0.03
VPS13D-204ENST00000469054 CEP126Q9P2H0 1117 aa14.84□□□□□ -0.03
VPS13D-204ENST00000469054 GLTPD2A6NH11 291 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 G3V3G9 751 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 EIF6P56537 245 aaKnown RBP14.83□□□□□ -0.04
VPS13D-204ENST00000469054 G3BP1Q13283 466 aaKnown RBP eCLIP14.83□□□□□ -0.04
VPS13D-204ENST00000469054 DOK7Q18PE1 504 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 DCAF8Q5TAQ9 597 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 DPY19L2Q6NUT2 758 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 C15orf52Q6ZUT6 534 aaKnown RBP14.83□□□□□ -0.04
VPS13D-204ENST00000469054 TXNRD3Q86VQ6 643 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 DBNDD1Q9H9R9 158 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 ZNRF3Q9ULT6 936 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 MED23Q9ULK4 1368 aa14.83□□□□□ -0.04
VPS13D-204ENST00000469054 HMMRO75330 724 aa14.82□□□□□ -0.04
VPS13D-204ENST00000469054 SURF6O75683 361 aaKnown RBP14.82□□□□□ -0.04
VPS13D-204ENST00000469054 KLRK1P26718 216 aa14.82□□□□□ -0.04
VPS13D-204ENST00000469054 SIRT2Q8IXJ6 389 aa14.82□□□□□ -0.04
VPS13D-204ENST00000469054 NOP58Q9Y2X3 529 aaKnown RBP14.82□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms