RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 POLKQ9UBT6 870 aa21.75■■□□□ 1.07
CCDC88B-204ENST00000463837 SPTLC2O15270 562 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 CCDC91Q7Z6B0 441 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 MICU3Q86XE3 530 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 MYRIPQ8NFW9 859 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 ALG1Q9BT22 464 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 ACEP12821 1306 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 FOXO3O43524 673 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 HAND2P61296 217 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 IFI16Q16666 785 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 PAF1Q8N7H5 531 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 JADE2Q9NQC1 790 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 UQCRFS1P1P0C7P4 283 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 HLTFQ14527 1009 aaKnown RBP eCLIP21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 CREB3L3Q68CJ9 461 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 GIGYF2Q6Y7W6 1299 aaKnown RBP21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 NMIQ13287 307 aaPredicted RBP21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 BRAPQ7Z569 592 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 KRT23Q9C075 422 aa21.74■■□□□ 1.07
CCDC88B-204ENST00000463837 GOPCQ9HD26 462 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 CTAGE9A4FU28 777 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 RNF216Q9NWF9 866 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 SSR1P43307 286 aaKnown RBP21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 KSR2Q6VAB6 950 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 CNNM2Q9H8M5 875 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 ZBTB43O43298 467 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 MATR3P43243 847 aaKnown RBP eCLIP21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 ADGRL2O95490 1459 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 OPA1O60313 960 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 HSP90AA4PQ58FG1 418 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 SPECC1Q5M775 1068 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 UBE3BQ7Z3V4 1068 aa21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 TEX13AQ9BXU3 409 aaPredicted RBP21.73■■□□□ 1.07
CCDC88B-204ENST00000463837 GRM8O00222 908 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 MCM6Q14566 821 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 UBA7P41226 1012 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 TICAM2Q86XR7 235 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 NGLY1Q96IV0 654 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 LRRC2Q9BYS8 371 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 EXOC5O00471 708 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 PPIP5K1Q6PFW1 1433 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 WDHD1O75717 1129 aaPredicted RBP21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 TSPYL6Q8N831 410 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 CHPF2Q9P2E5 772 aa21.72■■□□□ 1.07
CCDC88B-204ENST00000463837 KIF21AQ7Z4S6 1674 aa21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 SPECC1LQ69YQ0 1117 aa21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 SNRPA1P09661 255 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 FBLN1P23142 703 aa21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 DESP17661 470 aa21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 MPHOSPH10O00566 681 aaKnown RBP21.71■■□□□ 1.07
CCDC88B-204ENST00000463837 KIF24Q5T7B8 1368 aa21.7■■□□□ 1.07
CCDC88B-204ENST00000463837 DDX46Q7L014 1031 aaKnown RBP21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 IFNL2Q8IZJ0 200 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 ADAMTS2O95450 1211 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 FBXO31Q5XUX0 539 aaPredicted RBP21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 ANKRD13DQ6ZTN6 518 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 ZNF444Q8N0Y2 327 aaPredicted RBP21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 SNRKQ9NRH2 765 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 TRIM47Q96LD4 638 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 RSPH14Q9UHP6 348 aa21.7■■□□□ 1.06
CCDC88B-204ENST00000463837 KRT83P78385 493 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 MAATS1Q7Z4T9 603 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 MNAT1P51948 309 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 EIF4A2Q14240 407 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 CCDC40Q4G0X9 1142 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 RRAGBQ5VZM2 374 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 TRMT112Q9UI30 125 aaKnown RBP21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 GABPB1Q06547 395 aaPredicted RBP21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 CADPS2Q86UW7 1296 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 LMBRD1Q9NUN5 540 aa21.69■■□□□ 1.06
CCDC88B-204ENST00000463837 TRIM21P19474 475 aaKnown RBP21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 WTAPQ15007 396 aa21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 IL15P40933 162 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 NBPF7P0C2Y1 421 aaPredicted RBP21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 KIAA0556O60303 1618 aa21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 AKR1B10O60218 316 aa21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 TUBB2AQ13885 445 aa21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 TUBB2BQ9BVA1 445 aa21.68■■□□□ 1.06
CCDC88B-204ENST00000463837 FAM160A1Q05DH4 1040 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 DHX32Q7L7V1 743 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 LINS1Q8NG48 757 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 MSH6P52701 1360 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 LDHAL6AQ6ZMR3 332 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 A2MP01023 1474 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 LMOD1P29536 600 aaPredicted RBP21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 SYT10Q6XYQ8 523 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 DZIP1Q86YF9 867 aaKnown RBP21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 PPP1R9BQ96SB3 815 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 UBA5Q9GZZ9 404 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 EXOC1Q9NV70 894 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 IFNKQ9P0W0 207 aa21.67■■□□□ 1.06
CCDC88B-204ENST00000463837 ANXA1P04083 346 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 TNIP1Q15025 636 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 SLF2Q8IX21 1173 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 TACC1O75410 805 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 CAPN2P17655 700 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 PDE4BQ07343 736 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 GSTTP1A0A1W2PQM5 241 aa21.66■■□□□ 1.06
CCDC88B-204ENST00000463837 KRT28Q7Z3Y7 464 aa21.66■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms