RNA–Protein interactions for RNA: ENST00000463004.5

RBM39-223, Transcript of RNA binding motif protein 39, human

TSL 5

Gene RBM39, Length 4,580 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-223	ENST00000463004	ESR2	Q92731	530 aa		13.77	□□□□□ -0.21
RBM39-223	ENST00000463004	ZSCAN16	Q9H4T2	348 aa	Predicted RBP	13.77	□□□□□ -0.21
RBM39-223	ENST00000463004	CCDC171	Q6TFL3	1326 aa		13.77	□□□□□ -0.21
RBM39-223	ENST00000463004	CIAO1	O76071	339 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	JARID2	Q92833	1246 aa	Predicted RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	SNRK	Q9NRH2	765 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	STK32B	Q9NY57	414 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	TULP1	O00294	542 aa	Predicted RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	C8orf76	Q96K31	380 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	OVOS2	A0A0G2JMS6	1433 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	KCNQ3	O43525	872 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	CYP7A1	P22680	504 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	SLC9C2	Q5TAH2	1124 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	CRB1	P82279	1406 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	LOC102724428	A0A0B4J2F2	783 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004		A0A1B0GUL7	405 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	SIK1	P57059	783 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	NMI	Q13287	307 aa	Predicted RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	CAVIN1	Q6NZI2	390 aa	Known RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	FAM196A	Q6ZSG2	479 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	C16orf71	Q8IYS4	520 aa	Predicted RBP	13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	FAM89A	Q96GI7	184 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	OSBPL3	Q9H4L5	887 aa		13.76	□□□□□ -0.21
RBM39-223	ENST00000463004	ME1	P48163	572 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	USP26	Q9BXU7	913 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	STAP2	Q9UGK3	403 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	SEC63	Q9UGP8	760 aa	Known RBP	13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	GOLGA8A	A7E2F4	631 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	GOLGA8B	A8MQT2	603 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	CALM1	P0DP23	149 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	CALM2	P0DP24	149 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	CALM3	P0DP25	149 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	FOSB	P53539	338 aa		13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	SSRP1	Q08945	709 aa	Known RBP	13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	PYM1	Q9BRP8	204 aa	Known RBP	13.75	□□□□□ -0.21
RBM39-223	ENST00000463004	IPO7	O95373	1038 aa	Known RBP	13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	KBTBD3	Q8NAB2	608 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	CDK5RAP3	Q96JB5	506 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	PNMA6E	A0A0J9YXQ4	647 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	CTAGE5	O15320	804 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	NASP	P49321	788 aa	Predicted RBP	13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	ZC3H12C	Q9C0D7	883 aa	Known RBP	13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	HDAC9	Q9UKV0	1011 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	TMEM67	Q5HYA8	995 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	CPD	O75976	1380 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	KAT6B	Q8WYB5	2073 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	BMP15	O95972	392 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	APPBP2	Q92624	585 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	MAST3	O60307	1309 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	JCAD	Q9P266	1359 aa		13.74	□□□□□ -0.21
RBM39-223	ENST00000463004	RANBP6	O60518	1105 aa	Known RBP	13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	CLSTN1	O94985	981 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	CTSW	P56202	376 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	TMC4	Q7Z404	712 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	POLD1	P28340	1107 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	SKAP1	Q86WV1	359 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.73	□□□□□ -0.21	7e-10	■■□□□ 11.9
RBM39-223	ENST00000463004	TNMD	Q9H2S6	317 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	TSHZ3	Q63HK5	1081 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	TMX3	Q96JJ7	454 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	MAGEB6P1	A0A0J9YX57	407 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	SGSM2	O43147	1006 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	IARS	P41252	1262 aa	Known RBP	13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	WDR66	Q8TBY9	1149 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	CCDC39	Q9UFE4	941 aa		13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	SOS2	Q07890	1332 aa	Predicted RBP	13.73	□□□□□ -0.21
RBM39-223	ENST00000463004	STX6	O43752	255 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	STIM1	Q13586	685 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	NUP62CL	Q9H1M0	184 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	PPP1R1B	Q9UD71	204 aa	Predicted RBP	13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	SLC4A4	Q9Y6R1	1079 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	SPATA31A6	Q5VVP1	1343 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	NRK	Q7Z2Y5	1582 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	ATP2B2	Q01814	1243 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	TM6SF1	Q9BZW5	370 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	RTL9	Q8NET4	1388 aa		13.72	□□□□□ -0.21
RBM39-223	ENST00000463004	CREB3L3	Q68CJ9	461 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	TMED8	Q6PL24	325 aa	Predicted RBP	13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	DHX32	Q7L7V1	743 aa	Known RBP	13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	SUPT20H	Q8NEM7	779 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	XAGE2	Q96GT9	111 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	ATP10D	Q9P241	1426 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	CYP27B1	O15528	508 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	MYO1B	O43795	1136 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	CAVIN2	O95810	425 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	WTAP	Q15007	396 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	METAP2	P50579	478 aa	Known RBP eCLIP	13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	FILIP1L	Q4L180	1135 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	CLEC4G	Q6UXB4	293 aa		13.71	□□□□□ -0.21
RBM39-223	ENST00000463004	CCDC173	Q0VFZ6	552 aa		13.71	□□□□□ -0.22
RBM39-223	ENST00000463004	TSPY2	A6NKD2	308 aa		13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	RAB34	Q9BZG1	259 aa		13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	KAT14	Q9H8E8	782 aa		13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	CABP5	Q9NP86	173 aa		13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	DDX19A	Q9NUU7	478 aa	Known RBP	13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	HIBADH	P31937	336 aa	Known RBP	13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	MTX1	Q13505	466 aa		13.7	□□□□□ -0.22
RBM39-223	ENST00000463004	TBC1D22A	Q8WUA7	517 aa		13.7	□□□□□ -0.22

Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms