RNA–Protein interactions for RNA: ENST00000459854.5

UFD1-205, Transcript of ubiquitin recognition factor in ER associated degradation 1, humanhuman

TSL 1 (best)

Gene UFD1, Length 5,038 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UFD1-205ENST00000459854 TRIM22Q8IYM9 498 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 CCNL1Q9UK58 526 aaPredicted RBP11.3□□□□□ -0.6
UFD1-205ENST00000459854 ZNF652Q9Y2D9 606 aa11.3□□□□□ -0.6
UFD1-205ENST00000459854 SPA17Q15506 151 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 SKIDA1Q1XH10 827 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 PLEKHF1Q96S99 279 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 LGR6Q9HBX8 967 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 TOP1P11387 765 aaKnown RBP11.29□□□□□ -0.6
UFD1-205ENST00000459854 SLC39A6Q13433 755 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 CCDC43Q96MW1 224 aaKnown RBP11.29□□□□□ -0.6
UFD1-205ENST00000459854 PDRG1Q9NUG6 133 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 PIK3C2AO00443 1686 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 ZNF790Q6PG37 636 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 A0A1B0GUA9 196 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 USO1O60763 962 aaKnown RBP11.29□□□□□ -0.6
UFD1-205ENST00000459854 ZPR1O75312 459 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 CKAP4Q07065 602 aaKnown RBP11.29□□□□□ -0.6
UFD1-205ENST00000459854 C6orf163Q5TEZ5 329 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 DDX12PQ92771 950 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 CDCA7LQ96GN5 454 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 MBIPQ9NS73 344 aa11.29□□□□□ -0.6
UFD1-205ENST00000459854 KDRP35968 1356 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 BLOC1S2Q6QNY1 142 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 CDK5RAP3Q96JB5 506 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 TBC1D2Q9BYX2 928 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 CPSF2Q9P2I0 782 aaKnown RBP11.28□□□□□ -0.6
UFD1-205ENST00000459854 DBF4Q9UBU7 674 aaPredicted RBP11.28□□□□□ -0.6
UFD1-205ENST00000459854 TRIM37O94972 964 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 ADCY5O95622 1261 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 BRPF1P55201 1214 aaPredicted RBP11.28□□□□□ -0.6
UFD1-205ENST00000459854 KAT6BQ8WYB5 2073 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 CYP27B1O15528 508 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 OPA1O60313 960 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 SLC4A2P04920 1241 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 NHSL1Q5SYE7 1610 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 ABCC6O95255 1503 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 PLEKHG2Q9H7P9 1386 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 MYL6BP14649 208 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 NSRP1Q9H0G5 558 aaKnown RBP11.28□□□□□ -0.6
UFD1-205ENST00000459854 HYPKQ9NX55 129 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 STK32BQ9NY57 414 aa11.28□□□□□ -0.6
UFD1-205ENST00000459854 XRCC6P12956 609 aaKnown RBP eCLIP11.27□□□□□ -0.61e-14■■□□□ 12.5
UFD1-205ENST00000459854 STX1AQ16623 288 aa11.27□□□□□ -0.6
UFD1-205ENST00000459854 FAM177A1Q8N128 213 aaPredicted RBP11.27□□□□□ -0.6
UFD1-205ENST00000459854 WDR66Q8TBY9 1149 aa11.27□□□□□ -0.6
UFD1-205ENST00000459854 PPM1EQ8WY54 764 aa11.27□□□□□ -0.6
UFD1-205ENST00000459854 COL14A1Q05707 1796 aaKnown RBP11.27□□□□□ -0.61
UFD1-205ENST00000459854 STAMBPO95630 424 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 DCAF8L1A6NGE4 600 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 CCDC57Q2TAC2 916 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 IL17REQ8NFR9 667 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 SLU7O95391 586 aaKnown RBP11.27□□□□□ -0.61
UFD1-205ENST00000459854 CETN2P41208 172 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 CCDC50Q8IVM0 306 aa11.27□□□□□ -0.61
UFD1-205ENST00000459854 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.27□□□□□ -0.614e-7■■■■■ 46.9
UFD1-205ENST00000459854 C16orf45Q96MC5 204 aaPredicted RBP11.26□□□□□ -0.61
UFD1-205ENST00000459854 TAOK3Q9H2K8 898 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 CTNNA3Q9UI47 895 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 NFAT5O94916 1531 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 UBE2HP62256 183 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 ZFYVE27Q5T4F4 411 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 RSRC1Q96IZ7 334 aaKnown RBP11.26□□□□□ -0.61
UFD1-205ENST00000459854 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.26□□□□□ -0.61
UFD1-205ENST00000459854 HOXB7P09629 217 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 MAPK8IP2Q13387 824 aaPredicted RBP11.26□□□□□ -0.61
UFD1-205ENST00000459854 USP25Q9UHP3 1055 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 TBC1D2BQ9UPU7 963 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 EBAG9O00559 213 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 CEP112Q8N8E3 955 aa11.26□□□□□ -0.61
UFD1-205ENST00000459854 RTCBQ9Y3I0 505 aaKnown RBP11.26□□□□□ -0.61
UFD1-205ENST00000459854 CAMTA1Q9Y6Y1 1673 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 COL16A1Q07092 1604 aaPredicted RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 BAG4O95429 457 aaKnown RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 SLC3A2P08195 630 aaKnown RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 FAM182BQ5T319 152 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 TRIM34Q9BYJ4 488 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 SURF6O75683 361 aaKnown RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 YEATS4O95619 227 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 RFC4P35249 363 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 SH3BGRP55822 239 aaPredicted RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 IFFO1Q0D2I5 559 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 GBP6Q6ZN66 633 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 TBC1D32Q96NH3 1257 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 ALS2CR12Q96Q35 445 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 PHAXQ9H814 394 aaKnown RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 TRIM35Q9UPQ4 493 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 NRKQ7Z2Y5 1582 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 FGFR1OPO95684 399 aaKnown RBP11.25□□□□□ -0.61
UFD1-205ENST00000459854 ALDH1L2Q3SY69 923 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 NBPF11Q86T75 865 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 TFCP2L1Q9NZI6 479 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 CHL1O00533 1208 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 HSF2BPO75031 334 aa11.25□□□□□ -0.61
UFD1-205ENST00000459854 EIF5P55010 431 aaKnown RBP11.24□□□□□ -0.61
UFD1-205ENST00000459854 WASHC4Q2M389 1173 aa11.24□□□□□ -0.61
UFD1-205ENST00000459854 ZSCAN23Q3MJ62 389 aa11.24□□□□□ -0.61
UFD1-205ENST00000459854 POTEDQ86YR6 584 aa11.24□□□□□ -0.61
UFD1-205ENST00000459854 PYM1Q9BRP8 204 aaKnown RBP11.24□□□□□ -0.61
UFD1-205ENST00000459854 CTCFLQ8NI51 663 aaPredicted RBP11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms