RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ATG9AQ7Z3C6 839 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 COL18A1P39060 1754 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 TMEM94Q12767 1356 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 RFX7Q2KHR2 1363 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 H7C1W4 665 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 TYRO3Q06418 890 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 STOX1Q6ZVD7 989 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 TNMDQ9H2S6 317 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 MRVI1Q9Y6F6 885 aa13.97□□□□□ -0.17
CD44-209ENST00000433892 H3BQV1 296 aa13.96□□□□□ -0.17
CD44-209ENST00000433892 SCRN1Q12765 414 aa13.96□□□□□ -0.17
CD44-209ENST00000433892 IFFO2Q5TF58 517 aa13.96□□□□□ -0.17
CD44-209ENST00000433892 SPC24Q8NBT2 197 aa13.96□□□□□ -0.17
CD44-209ENST00000433892 PAG1Q9NWQ8 432 aa13.96□□□□□ -0.17
CD44-209ENST00000433892 A1BGP04217 495 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 FAM200AQ8TCP9 573 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 PGBD1Q96JS3 809 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 PDCL3Q9H2J4 239 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 CWC25Q9NXE8 425 aaPredicted RBP13.95□□□□□ -0.18
CD44-209ENST00000433892 SH3TC1Q8TE82 1336 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 NR1I2O75469 434 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 RESTQ13127 1097 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 LUZP1Q86V48 1076 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 ZNF594Q96JF6 807 aaPredicted RBP13.95□□□□□ -0.18
CD44-209ENST00000433892 ZBTB3Q9H5J0 574 aa13.95□□□□□ -0.18
CD44-209ENST00000433892 LRRC24Q50LG9 513 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 BICD2Q8TD16 824 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 A0A0G2JLW4 131 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 FOSBP53539 338 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 CEBPZQ03701 1054 aaKnown RBP13.94□□□□□ -0.18
CD44-209ENST00000433892 ANO6Q4KMQ2 910 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 DHX32Q7L7V1 743 aaKnown RBP13.94□□□□□ -0.18
CD44-209ENST00000433892 DDX19AQ9NUU7 478 aaKnown RBP13.94□□□□□ -0.18
CD44-209ENST00000433892 TNS3Q68CZ2 1445 aa13.94□□□□□ -0.18
CD44-209ENST00000433892 IL15P40933 162 aaPredicted RBP13.93□□□□□ -0.18
CD44-209ENST00000433892 APOBRQ0VD83 1088 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 KCNF1Q9H3M0 494 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 CLSTN2Q9H4D0 955 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 GLI3P10071 1580 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 PALLDQ8WX93 1383 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 DYNC1I1O14576 645 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 PFKFB2O60825 505 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 PPFIA3O75145 1194 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 HMGB1P09429 215 aaKnown RBP13.93□□□□□ -0.18
CD44-209ENST00000433892 GLIPR1L2Q4G1C9 344 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 CBX8Q9HC52 389 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 HELLSQ9NRZ9 838 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 ABCC6O95255 1503 aa13.93□□□□□ -0.18
CD44-209ENST00000433892 PKD1L3Q7Z443 1732 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 CCT2P78371 535 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 NSUN7Q8NE18 718 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 SMARCC2Q8TAQ2 1214 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 DSCC1Q9BVC3 393 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 ZSCAN16Q9H4T2 348 aaPredicted RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 NAP1L2Q9ULW6 460 aaPredicted RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 SPATA31A3Q5VYP0 1347 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 A0A1B0GUL7 405 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 EYA2O00167 538 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 CTDNEP1O95476 244 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 IFIT1P09914 478 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 HSPD1P10809 573 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 ZMYM1Q5SVZ6 1142 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 CHST3Q7LGC8 479 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 ZCRB1Q8TBF4 217 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 PUS3Q9BZE2 481 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 NCOA5Q9HCD5 579 aaKnown RBP13.92□□□□□ -0.18
CD44-209ENST00000433892 GPR108Q9NPR9 543 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 SPTLC3Q9NUV7 552 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 PYCARDQ9ULZ3 195 aa13.92□□□□□ -0.18
CD44-209ENST00000433892 E7EWF7 191 aa13.91□□□□□ -0.18
CD44-209ENST00000433892 RBM43Q6ZSC3 357 aaKnown RBP13.91□□□□□ -0.18
CD44-209ENST00000433892 LLPHQ9BRT6 129 aaKnown RBP13.91□□□□□ -0.18
CD44-209ENST00000433892 FTOQ9C0B1 505 aaKnown RBP eCLIP13.91□□□□□ -0.18
CD44-209ENST00000433892 CFAP45Q9UL16 551 aa13.91□□□□□ -0.18
CD44-209ENST00000433892 MAST3O60307 1309 aa13.91□□□□□ -0.18
CD44-209ENST00000433892 PLEKHG2Q9H7P9 1386 aa13.91□□□□□ -0.18
CD44-209ENST00000433892 PTPDC1A2A3K4 754 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 EXOSC10Q01780 885 aaKnown RBP13.9□□□□□ -0.18
CD44-209ENST00000433892 TOM1L2Q6ZVM7 507 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 CADPS2Q86UW7 1296 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 CCDC191Q8NCU4 936 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 GOLGA6L6A8MZA4 724 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 ADD1P35611 737 aaKnown RBP13.9□□□□□ -0.18
CD44-209ENST00000433892 TTLL5Q6EMB2 1281 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 KIAA1524Q8TCG1 905 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 DNAJC25Q9H1X3 360 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 PCDH11XQ9BZA7 1347 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 PCDH11YQ9BZA8 1340 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 LAMB4A4D0S4 1761 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 CPDO75976 1380 aa13.9□□□□□ -0.18
CD44-209ENST00000433892 RNF113AO15541 343 aaKnown RBP13.89□□□□□ -0.19
CD44-209ENST00000433892 FKBP4Q02790 459 aaKnown RBP eCLIP13.89□□□□□ -0.19
CD44-209ENST00000433892 MYRIPQ8NFW9 859 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 M0R2C6 588 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 TPM3P06753 285 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 PTGS1P23219 599 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 ZNF165P49910 485 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 GUCY1B3Q02153 619 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 AGXT2Q9BYV1 514 aa13.89□□□□□ -0.19
CD44-209ENST00000433892 PRDM11Q9NQV5 511 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms