RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 EPHA10Q5JZY3 1008 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 DDX11Q96FC9 970 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 MYD88Q99836 296 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 AXIN2Q9Y2T1 843 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 CTIFO43310 598 aaKnown RBP11.54□□□□□ -0.56
CD44-206ENST00000415148 JAK2O60674 1132 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 NR1I2O75469 434 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 NCBP1Q09161 790 aaKnown RBP11.54□□□□□ -0.56
CD44-206ENST00000415148 PLA2G4DQ86XP0 818 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 SMARCC2Q8TAQ2 1214 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 KLHDC4Q8TBB5 520 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 DBNLQ9UJU6 430 aaKnown RBP11.54□□□□□ -0.56
CD44-206ENST00000415148 ERBB3P21860 1342 aa11.54□□□□□ -0.56
CD44-206ENST00000415148 KIF1AQ12756 1690 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 CTAGE5O15320 804 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 SNRPA1P09661 255 aaKnown RBP11.53□□□□□ -0.56
CD44-206ENST00000415148 CDC25BP30305 580 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 Q6ZUG5 572 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 LRP10Q7Z4F1 713 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 RAPGEF4Q8WZA2 1011 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 DNAJC25Q9H1X3 360 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 TMEM94Q12767 1356 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 PFKFB2O60825 505 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 MYL6BP14649 208 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 PHKG2P15735 406 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 TFCP2Q12800 502 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 NAA16Q6N069 864 aaPredicted RBP11.53□□□□□ -0.56
CD44-206ENST00000415148 CACTINQ8WUQ7 758 aaKnown RBP11.53□□□□□ -0.56
CD44-206ENST00000415148 NDUFB9Q9Y6M9 179 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 SH3TC1Q8TE82 1336 aa11.53□□□□□ -0.56
CD44-206ENST00000415148 KDM6AO15550 1401 aaPredicted RBP11.52□□□□□ -0.56
CD44-206ENST00000415148 USP27XA6NNY8 438 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 H3BQV1 296 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 TATP17735 454 aaPredicted RBP11.52□□□□□ -0.57
CD44-206ENST00000415148 ZNF75DP51815 510 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 UTP14CQ5TAP6 766 aaKnown RBP11.52□□□□□ -0.57
CD44-206ENST00000415148 IFFO2Q5TF58 517 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 ZSCAN25Q6NSZ9 544 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 KRT28Q7Z3Y7 464 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 ORAI2Q96SN7 254 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 GPR108Q9NPR9 543 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 HELLSQ9NRZ9 838 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 PALLDQ8WX93 1383 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 ZNF609O15014 1411 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 CYP21A2P08686 494 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 DHX32Q7L7V1 743 aaKnown RBP11.52□□□□□ -0.57
CD44-206ENST00000415148 IFNL2Q8IZJ0 200 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 KBTBD3Q8NAB2 608 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 NFATC2IPQ8NCF5 419 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 BICD2Q8TD16 824 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 BRF1Q92994 677 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 DSCC1Q9BVC3 393 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 AGXT2Q9BYV1 514 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 FTOQ9C0B1 505 aaKnown RBP eCLIP11.52□□□□□ -0.57
CD44-206ENST00000415148 RCOR1Q9UKL0 485 aa11.52□□□□□ -0.57
CD44-206ENST00000415148 RGPD5Q99666 1765 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 AFDNP55196 1824 aaKnown RBP11.51□□□□□ -0.57
CD44-206ENST00000415148 PPFIA3O75145 1194 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 ZNF165P49910 485 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 FOSBP53539 338 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 SLC39A6Q13433 755 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 DRC7Q8IY82 874 aa11.51□□□□□ -0.57
CD44-206ENST00000415148 HSP90B1P14625 803 aaKnown RBP11.5□□□□□ -0.57
CD44-206ENST00000415148 SYCP1Q15431 976 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 SARM1Q6SZW1 724 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 ZNF496Q96IT1 587 aaPredicted RBP11.5□□□□□ -0.57
CD44-206ENST00000415148 DCAF5Q96JK2 942 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 FMNL2Q96PY5 1086 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 TRIM5Q9C035 493 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 NEMFO60524 1076 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 CASP7P55210 303 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 CEBPZQ03701 1054 aaKnown RBP11.5□□□□□ -0.57
CD44-206ENST00000415148 SCRN1Q12765 414 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 TTC5Q8N0Z6 440 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 PLBD2Q8NHP8 589 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 RBM33Q96EV2 1170 aaKnown RBP11.5□□□□□ -0.57
CD44-206ENST00000415148 USP16Q9Y5T5 823 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 ARFGEF2Q9Y6D5 1785 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 MYH15Q9Y2K3 1946 aa11.5□□□□□ -0.57
CD44-206ENST00000415148 ADD1P35611 737 aaKnown RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 EXOSC10Q01780 885 aaKnown RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 LMOD2Q6P5Q4 547 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 C11orf57Q6ZUT1 292 aaPredicted RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 FBXL16Q8N461 479 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 ERCC4Q92889 916 aaPredicted RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 ZNF396Q96N95 335 aaPredicted RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 DBNDD2Q9BQY9 259 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 LRRC2Q9BYS8 371 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 ALS2Q96Q42 1657 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 A0A087WZG4 1122 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 TNNT1P13805 278 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 CCDC129Q6ZRS4 1044 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 NSUN7Q8NE18 718 aaKnown RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 ZNF274Q96GC6 653 aaPredicted RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.49□□□□□ -0.57
CD44-206ENST00000415148 PAXBP1Q9Y5B6 917 aa11.49□□□□□ -0.57
CD44-206ENST00000415148 V9GYY5 206 aaPredicted RBP11.49□□□□□ -0.57
CD44-206ENST00000415148 H7C1W4 665 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 FGD1P98174 961 aa11.48□□□□□ -0.57
CD44-206ENST00000415148 SLFNL1Q499Z3 407 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.2 ms