RNA–Protein interactions for RNA: ENST00000397099.1

SEC13-204, Transcript of SEC13 homolog, nuclear pore and COPII coat complex component, humanhuman

TSL 4

Gene SEC13, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SEC13-204ENST00000397099 GGA1Q9UJY5 639 aa17.67■□□□□ 0.42
SEC13-204ENST00000397099 TMEM88BA6NKF7 163 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 GRM8O00222 908 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 CSF1RP07333 972 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 CASP7P55210 303 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 GPSM2P81274 684 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 CXCL9Q07325 125 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 USP50Q70EL3 339 aaPredicted RBP17.66■□□□□ 0.42
SEC13-204ENST00000397099 JARID2Q92833 1246 aaPredicted RBP17.66■□□□□ 0.42
SEC13-204ENST00000397099 SRCIN1Q9C0H9 1055 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 POLLQ9UGP5 575 aa17.66■□□□□ 0.42
SEC13-204ENST00000397099 RAD17O75943 681 aa17.65■□□□□ 0.42
SEC13-204ENST00000397099 ITGBL1O95965 494 aaPredicted RBP17.65■□□□□ 0.42
SEC13-204ENST00000397099 ATP2B4P23634 1241 aa17.65■□□□□ 0.42
SEC13-204ENST00000397099 BCL2L13Q9BXK5 485 aa17.65■□□□□ 0.42
SEC13-204ENST00000397099 GREM2Q9H772 168 aa17.65■□□□□ 0.42
SEC13-204ENST00000397099 C9orf78Q9NZ63 289 aaPredicted RBP17.65■□□□□ 0.42
SEC13-204ENST00000397099 ADAMTSL1Q8N6G6 1762 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 F6X3S4 739 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 G3V3G9 751 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 HSPA1AP0DMV8 641 aaKnown RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 HSPA1BP0DMV9 641 aaKnown RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 GMPSP49915 693 aaPredicted RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 DCAF8Q5TAQ9 597 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 MRPL50Q8N5N7 158 aaKnown RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 CCDC85AQ96PX6 553 aaPredicted RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 MPHOSPH8Q99549 860 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 ANKRD2Q9GZV1 360 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 ADARB2Q9NS39 739 aaKnown RBP17.64■□□□□ 0.41
SEC13-204ENST00000397099 GPRC5DQ9NZD1 345 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 PCNTO95613 3336 aa17.64■□□□□ 0.41
SEC13-204ENST00000397099 RIMBP2O15034 1052 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 UFL1O94874 794 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 ITGA6P23229 1130 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 RPS12P25398 132 aaKnown RBP17.63■□□□□ 0.41
SEC13-204ENST00000397099 SLC4A10Q6U841 1118 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 DPF2Q92785 391 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 CNTNAP1P78357 1384 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 SPEF2Q9C093 1822 aa17.63■□□□□ 0.41
SEC13-204ENST00000397099 COL4A1P02462 1669 aa17.62■□□□□ 0.41
SEC13-204ENST00000397099 ANKRD18BA2A2Z9 1011 aa17.62■□□□□ 0.41
SEC13-204ENST00000397099 BRPF1P55201 1214 aaPredicted RBP17.62■□□□□ 0.41
SEC13-204ENST00000397099 IFIT5Q13325 482 aaKnown RBP17.62■□□□□ 0.41
SEC13-204ENST00000397099 SSH1Q8WYL5 1049 aa17.62■□□□□ 0.41
SEC13-204ENST00000397099 ABT1Q9ULW3 272 aaKnown RBP17.62■□□□□ 0.41
SEC13-204ENST00000397099 MINPP1Q9UNW1 487 aa17.62■□□□□ 0.41
SEC13-204ENST00000397099 LEMD3Q9Y2U8 911 aa17.62■□□□□ 0.41
SEC13-204ENST00000397099 CDCA7LQ96GN5 454 aa17.61■□□□□ 0.41
SEC13-204ENST00000397099 SMC4Q9NTJ3 1288 aa17.61■□□□□ 0.41
SEC13-204ENST00000397099 H7C1D1 291 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 ECE2O60344 883 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 FAM161AQ3B820 660 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 PODNQ7Z5L7 613 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 ZC3H15Q8WU90 426 aaKnown RBP17.6■□□□□ 0.41
SEC13-204ENST00000397099 DBNDD1Q9H9R9 158 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 UTYO14607 1347 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 MED23Q9ULK4 1368 aa17.6■□□□□ 0.41
SEC13-204ENST00000397099 PSME4Q14997 1843 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 ZNF609O15014 1411 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 YDJCA8MPS7 323 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 CCT4P50991 539 aaKnown RBP17.59■□□□□ 0.41
SEC13-204ENST00000397099 FOXO4P98177 505 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 CCDC57Q2TAC2 916 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 COL13A1Q5TAT6 717 aaPredicted RBP17.59■□□□□ 0.41
SEC13-204ENST00000397099 GPR101Q96P66 508 aaPredicted RBP17.59■□□□□ 0.41
SEC13-204ENST00000397099 HDAC5Q9UQL6 1122 aa17.59■□□□□ 0.41
SEC13-204ENST00000397099 VEGFBP49765 207 aa17.58■□□□□ 0.4
SEC13-204ENST00000397099 MMP14P50281 582 aa17.58■□□□□ 0.4
SEC13-204ENST00000397099 DOK7Q18PE1 504 aa17.58■□□□□ 0.4
SEC13-204ENST00000397099 MIER1Q8N108 512 aa17.58■□□□□ 0.4
SEC13-204ENST00000397099 CNOT7Q9UIV1 285 aaKnown RBP17.58■□□□□ 0.4
SEC13-204ENST00000397099 TRAF5O00463 557 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 PSMD14O00487 310 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 FMR1Q06787 632 aaKnown RBP eCLIP17.57■□□□□ 0.4
SEC13-204ENST00000397099 DEFB115Q30KQ5 88 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 TAF7LQ5H9L4 462 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 LMBR1LQ6UX01 489 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 PAXIP1Q6ZW49 1069 aaPredicted RBP17.57■□□□□ 0.4
SEC13-204ENST00000397099 ZBTB12Q9Y330 459 aaPredicted RBP17.57■□□□□ 0.4
SEC13-204ENST00000397099 CHMP3Q9Y3E7 222 aa17.57■□□□□ 0.4
SEC13-204ENST00000397099 KIF16BQ96L93 1317 aa17.56■□□□□ 0.4
SEC13-204ENST00000397099 VIL1P09327 827 aaKnown RBP17.56■□□□□ 0.4
SEC13-204ENST00000397099 MICALL2Q8IY33 904 aa17.56■□□□□ 0.4
SEC13-204ENST00000397099 AIDAQ96BJ3 306 aa17.56■□□□□ 0.4
SEC13-204ENST00000397099 API5Q9BZZ5 524 aaKnown RBP17.56■□□□□ 0.4
SEC13-204ENST00000397099 ZNF804BA4D1E1 1349 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 SHTN1A0MZ66 631 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 RASSF10A6NK89 507 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 KCNJ4P48050 445 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 AGBL3Q8NEM8 1001 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 TRPM4Q8TD43 1214 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 ARHGAP45Q92619 1136 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 COA1Q9GZY4 146 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 PGAP2Q9UHJ9 254 aa17.55■□□□□ 0.4
SEC13-204ENST00000397099 MYO3BQ8WXR4 1341 aa17.54■□□□□ 0.4
SEC13-204ENST00000397099 SCN9AQ15858 1988 aa17.54■□□□□ 0.4
SEC13-204ENST00000397099 USP17L3A6NCW0 530 aa17.54■□□□□ 0.4
SEC13-204ENST00000397099 USP17L4A6NCW7 530 aa17.54■□□□□ 0.4
SEC13-204ENST00000397099 CHRNDQ07001 517 aa17.54■□□□□ 0.4
SEC13-204ENST00000397099 LDHAL6AQ6ZMR3 332 aa17.54■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 48.3 ms