RNA–Protein interactions for RNA: ENST00000372755.7

VCL-202, Transcript of vinculin, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VCL, Length 6,489 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-202ENST00000372755 ANKRD24Q8TF21 1146 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 MRVI1Q9Y6F6 885 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 KRT83P78385 493 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 CALM1P0DP23 149 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 CALM2P0DP24 149 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 CALM3P0DP25 149 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 SMARCC2Q8TAQ2 1214 aa13.12□□□□□ -0.31
VCL-202ENST00000372755 CCDC6Q16204 474 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 ARHGAP45Q92619 1136 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 ASIC1P78348 528 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 SLC4A8Q2Y0W8 1093 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 TMX3Q96JJ7 454 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 C6orf50Q9HD87 102 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 NCOA1Q15788 1441 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 IVLP07476 585 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 SRRTQ9BXP5 876 aaKnown RBP13.11□□□□□ -0.31
VCL-202ENST00000372755 NDC80O14777 642 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 NAPAP54920 295 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 ARFGAP3Q9NP61 516 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 RTL9Q8NET4 1388 aa13.11□□□□□ -0.31
VCL-202ENST00000372755 ARL1P40616 181 aaPredicted RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 MCMDC2Q4G0Z9 681 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 GIMAP6Q6P9H5 292 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 PAIP2Q9BPZ3 127 aaKnown RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 ANKRD36BQ8N2N9 1353 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 MAPK8IP2Q13387 824 aaPredicted RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 ATP2B3Q16720 1220 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 ANO6Q4KMQ2 910 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 KRT222Q8N1A0 295 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 OTUD6BQ8N6M0 293 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 MSANTD4Q8NCY6 345 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 RGS22Q8NE09 1264 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 SKILP12757 684 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 TUBB4BP68371 445 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 NCBP1Q09161 790 aaKnown RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 GSTA5Q7RTV2 222 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 TBC1D32Q96NH3 1257 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 SMC6Q96SB8 1091 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 HCLS1P14317 486 aaPredicted RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 KIAA1524Q8TCG1 905 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 FAM200AQ8TCP9 573 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 BICDL2A1A5D9 508 aa13.1□□□□□ -0.31
VCL-202ENST00000372755 PUS7Q96PZ0 661 aaKnown RBP13.1□□□□□ -0.31
VCL-202ENST00000372755 CCDC129Q6ZRS4 1044 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 SCAF11Q99590 1463 aaKnown RBP13.09□□□□□ -0.31
VCL-202ENST00000372755 NUCB1Q02818 461 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 NAA16Q6N069 864 aaPredicted RBP13.09□□□□□ -0.31
VCL-202ENST00000372755 ZNF804AQ7Z570 1209 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 ANKS4BQ8N8V4 417 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 NOL12Q9UGY1 213 aaKnown RBP eCLIP13.09□□□□□ -0.31
VCL-202ENST00000372755 V9GYY5 206 aaPredicted RBP13.09□□□□□ -0.31
VCL-202ENST00000372755 ALDH1L1O75891 902 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 CALML3P27482 149 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 SERPINA10Q9UK55 444 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 CTAGE9A4FU28 777 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 CA8P35219 290 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 HDAC1Q13547 482 aaPredicted RBP13.09□□□□□ -0.31
VCL-202ENST00000372755 TRERF1Q96PN7 1200 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 KRT86O43790 486 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 GNAT2P19087 354 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 CD109Q6YHK3 1445 aa13.09□□□□□ -0.31
VCL-202ENST00000372755 ATP2C2O75185 946 aa13.08□□□□□ -0.31
VCL-202ENST00000372755 IL15P40933 162 aaPredicted RBP13.08□□□□□ -0.31
VCL-202ENST00000372755 NECAB1Q8N987 351 aa13.08□□□□□ -0.31
VCL-202ENST00000372755 DNAI1Q9UI46 699 aa13.08□□□□□ -0.31
VCL-202ENST00000372755 FAM13AO94988 1023 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 MAP3K9P80192 1104 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 KRT79Q5XKE5 535 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 MSL1Q68DK7 614 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 ANAPC4Q9UJX5 808 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 RBM8AQ9Y5S9 174 aaKnown RBP13.08□□□□□ -0.32
VCL-202ENST00000372755 TRIM75PA6NK02 468 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 EEF2P13639 858 aaKnown RBP13.08□□□□□ -0.32
VCL-202ENST00000372755 KIF5AQ12840 1032 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 OGFOD1Q8N543 542 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 CCDC63Q8NA47 563 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 RRP36Q96EU6 259 aaKnown RBP13.08□□□□□ -0.32
VCL-202ENST00000372755 SETDB2Q96T68 719 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 MAGI1Q96QZ7 1491 aaPredicted RBP13.08□□□□□ -0.32
VCL-202ENST00000372755 PPFIA3O75145 1194 aa13.08□□□□□ -0.32
VCL-202ENST00000372755 MNAT1P51948 309 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 TSHZ3Q63HK5 1081 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 Q6ZUG5 572 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 CNPY2Q9Y2B0 182 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 ATP2A2P16615 1042 aaKnown RBP13.07□□□□□ -0.32
VCL-202ENST00000372755 DAAM2Q86T65 1068 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 TCHPQ9BT92 498 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 SPDYE3A6NKU9 549 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 FMNL3Q8IVF7 1028 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 GOLGA1Q92805 767 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 RTL1A6NKG5 1358 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 SDSP20132 328 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 SYT1P21579 422 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 AOPEPQ8N6M6 819 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 IPO4Q8TEX9 1081 aaKnown RBP13.07□□□□□ -0.32
VCL-202ENST00000372755 DMRT2Q9Y5R5 561 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 ARHGEF11O15085 1522 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 NLRP3Q96P20 1036 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 ESYT1Q9BSJ8 1104 aa13.07□□□□□ -0.32
VCL-202ENST00000372755 RNF216Q9NWF9 866 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 82 ms