RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 PRKCQQ04759 706 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 DNTTIP2Q5QJE6 756 aaKnown RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 FBXW10Q5XX13 1052 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 SULT6B1Q6IMI4 303 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 KRT26Q7Z3Y9 468 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 HOMER1Q86YM7 354 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 CHURC1Q8WUH1 139 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 RPS6KC1Q96S38 1066 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 SLITRK6Q9H5Y7 841 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 IL1RAPL2Q9NP60 686 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 U3KPZ7 1027 aaPredicted RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 EVI5O60447 810 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 LDHBP07195 334 aaKnown RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 HMOX1P09601 288 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 HMGN5P82970 282 aaKnown RBP4.73□□□□□ -1.65
USH2A-202ENST00000366942 MCMDC2Q4G0Z9 681 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 NAPBQ9H115 298 aa4.73□□□□□ -1.65
USH2A-202ENST00000366942 PHACTR2O75167 634 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 IRX6P78412 446 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 HERC4Q5GLZ8 1057 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 NSUN7Q8NE18 718 aaKnown RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 EDEM3Q9BZQ6 932 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 PHAXQ9H814 394 aaKnown RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 FAN1Q9Y2M0 1017 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ZMYND10O75800 440 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 P4HBP07237 508 aaKnown RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 GPTP24298 496 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 CCT4P50991 539 aaKnown RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 CNTROBQ8N137 903 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ZFP91Q96JP5 570 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 GOPCQ9HD26 462 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 SPDYE3A6NKU9 549 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ELL2O00472 640 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 EN1Q05925 392 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 GOLGA8FQ08AF8 430 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 GOLGA8DPQ0D2H9 430 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 INTS3Q68E01 1043 aaKnown RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 NT5DC4Q86YG4 428 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 N4BP2L2Q92802 583 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 OSBP2Q969R2 916 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ADPGKQ9BRR6 497 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 IQSEC3Q9UPP2 1182 aaPredicted RBP4.72□□□□□ -1.65
USH2A-202ENST00000366942 PCDHB9Q9Y5E1 797 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ASXL2Q76L83 1435 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ZBED9Q6R2W3 1325 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 CCDC175P0C221 793 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 MMP14P50281 582 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 PLCB4Q15147 1175 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 TTC22Q5TAA0 569 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 TMEM132EQ6IEE7 984 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 PGBD3Q8N328 593 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 PPM1EQ8WY54 764 aa4.72□□□□□ -1.65
USH2A-202ENST00000366942 ACTN2P35609 894 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 RPUSD2Q8IZ73 545 aaKnown RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 SLC7A5P2Q9GIP4 190 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 GGNBP2Q9H3C7 697 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 TTC12Q9H892 705 aaPredicted RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 GDPD2Q9HCC8 539 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 FBXO40Q9UH90 709 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 C9orf84Q5VXU9 1444 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 FGFR1OPO95684 399 aaKnown RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 RPLP2P05387 115 aaKnown RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 RBM25P49756 843 aaKnown RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 RARSP54136 660 aaKnown RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 KIAA1524Q8TCG1 905 aa4.71□□□□□ -1.65
USH2A-202ENST00000366942 OXCT2Q9BYC2 517 aaPredicted RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 DBF4Q9UBU7 674 aaPredicted RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 ZNF215Q9UL58 517 aaPredicted RBP4.71□□□□□ -1.65
USH2A-202ENST00000366942 BBOX1O75936 387 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 IDEP14735 1019 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 LMNB1P20700 586 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 AMER1Q5JTC6 1135 aaPredicted RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 TEKT1Q969V4 418 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 TSNARE1Q96NA8 513 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 ANGEL1Q9UNK9 670 aaKnown RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 FARP1Q9Y4F1 1045 aaPredicted RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 GAS8O95995 478 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 NPR1P16066 1061 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 ATF7P17544 494 aaPredicted RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 NNMTP40261 264 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 PRMT2P55345 433 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 FKBP4Q02790 459 aaKnown RBP eCLIP4.71□□□□□ -1.66
USH2A-202ENST00000366942 PKN2Q16513 984 aaKnown RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 ZKSCAN2Q63HK3 967 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 LMBRD2Q68DH5 695 aaPredicted RBP4.71□□□□□ -1.66
USH2A-202ENST00000366942 CEP68Q76N32 757 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 HS2ST1Q7LGA3 356 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 KAT14Q9H8E8 782 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 MAP10Q9P2G4 905 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 VPS36Q86VN1 386 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 ANKRD35Q8N283 1001 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 ANO2Q9NQ90 1003 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 FAM8A1Q9UBU6 413 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 SH3TC1Q8TE82 1336 aa4.71□□□□□ -1.66
USH2A-202ENST00000366942 TSPY2A6NKD2 308 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 SURF6O75683 361 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 LIG1P18858 919 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 POLR2BP30876 1174 aaKnown RBP4.7□□□□□ -1.66
USH2A-202ENST00000366942 KIF11P52732 1056 aa4.7□□□□□ -1.66
USH2A-202ENST00000366942 NR1H3Q13133 447 aa4.7□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms