RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 ANO8Q9HCE9 1232 aaPredicted RBP22.81■■□□□ 1.24
CLN3-204ENST00000357857 STK32BQ9NY57 414 aa22.81■■□□□ 1.24
CLN3-204ENST00000357857 MROH5Q6ZUA9 1318 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 A0A1B0GUL7 405 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 SLC15A2Q16348 729 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 PRR5LQ6MZQ0 368 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 NLGN1Q8N2Q7 840 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 UPF2Q9HAU5 1272 aaKnown RBP22.8■■□□□ 1.24
CLN3-204ENST00000357857 COL4A1P02462 1669 aa22.8■■□□□ 1.24
CLN3-204ENST00000357857 TIMM10P62072 90 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 DDR1Q08345 913 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 CNTROBQ8N137 903 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 POLRMTO00411 1230 aaKnown RBP22.79■■□□□ 1.24
CLN3-204ENST00000357857 MAP4K4O95819 1239 aaPredicted RBP22.79■■□□□ 1.24
CLN3-204ENST00000357857 MFAP1P55081 439 aaKnown RBP22.79■■□□□ 1.24
CLN3-204ENST00000357857 ST5P78524 1137 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 DEFB132Q7Z7B7 95 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 VGLL2Q8N8G2 317 aa22.79■■□□□ 1.24
CLN3-204ENST00000357857 ATP5JP18859 108 aa22.78■■□□□ 1.24
CLN3-204ENST00000357857 ANKRD18AQ8IVF6 992 aa22.78■■□□□ 1.24
CLN3-204ENST00000357857 A0A1B0GUL6 1792 aa22.78■■□□□ 1.24
CLN3-204ENST00000357857 EIF5BO60841 1220 aaKnown RBP22.77■■□□□ 1.24
CLN3-204ENST00000357857 ATP2B3Q16720 1220 aa22.77■■□□□ 1.24
CLN3-204ENST00000357857 NRXN2Q9P2S2 1712 aa22.77■■□□□ 1.24
CLN3-204ENST00000357857 PDE8BO95263 885 aa22.77■■□□□ 1.23
CLN3-204ENST00000357857 BOLA2Q9H3K6 86 aa22.77■■□□□ 1.23
CLN3-204ENST00000357857 ARAP2Q8WZ64 1704 aa22.76■■□□□ 1.23
CLN3-204ENST00000357857 CCDC125Q86Z20 511 aa22.75■■□□□ 1.23
CLN3-204ENST00000357857 XAGE2Q96GT9 111 aa22.75■■□□□ 1.23
CLN3-204ENST00000357857 DDX46Q7L014 1031 aaKnown RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 EVI5LQ96CN4 794 aa22.74■■□□□ 1.23
CLN3-204ENST00000357857 CHMLP26374 656 aa22.74■■□□□ 1.23
CLN3-204ENST00000357857 ADORA1P30542 326 aa22.74■■□□□ 1.23
CLN3-204ENST00000357857 ANP32AP39687 249 aaKnown RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 PUM3Q15397 648 aaKnown RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 HELBQ8NG08 1087 aaPredicted RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 CELF1Q92879 486 aaKnown RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 BSDC1Q9NW68 430 aaPredicted RBP22.74■■□□□ 1.23
CLN3-204ENST00000357857 GORABQ5T7V8 394 aa22.73■■□□□ 1.23
CLN3-204ENST00000357857 UPF1Q92900 1129 aaKnown RBP eCLIP22.73■■□□□ 1.23
CLN3-204ENST00000357857 ANKRD31Q8N7Z5 1873 aa22.72■■□□□ 1.23
CLN3-204ENST00000357857 RPS8P62241 208 aaKnown RBP22.72■■□□□ 1.23
CLN3-204ENST00000357857 CHRNDQ07001 517 aa22.72■■□□□ 1.23
CLN3-204ENST00000357857 CCDC158Q5M9N0 1113 aa22.72■■□□□ 1.23
CLN3-204ENST00000357857 LPIN2Q92539 896 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 TBC1D32Q96NH3 1257 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 HAUS7Q99871 368 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 MMP10P09238 476 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 FGFR2P21802 821 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 MSL1Q68DK7 614 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 PPIL4Q8WUA2 492 aaKnown RBP eCLIP22.71■■□□□ 1.23
CLN3-204ENST00000357857 PARP3Q9Y6F1 533 aa22.71■■□□□ 1.23
CLN3-204ENST00000357857 TAF5LO75529 589 aa22.7■■□□□ 1.22
CLN3-204ENST00000357857 SLC5A1P13866 664 aa22.7■■□□□ 1.22
CLN3-204ENST00000357857 TTC39AQ5SRH9 613 aa22.7■■□□□ 1.22
CLN3-204ENST00000357857 CRY2Q49AN0 593 aa22.69■■□□□ 1.22
CLN3-204ENST00000357857 RPGRQ92834 1020 aaKnown RBP22.69■■□□□ 1.22
CLN3-204ENST00000357857 DNAJC2Q99543 621 aaKnown RBP22.69■■□□□ 1.22
CLN3-204ENST00000357857 ESYT1Q9BSJ8 1104 aa22.69■■□□□ 1.22
CLN3-204ENST00000357857 C22orf23Q9BZE7 217 aa22.69■■□□□ 1.22
CLN3-204ENST00000357857 IFIT1P09914 478 aaKnown RBP22.68■■□□□ 1.22
CLN3-204ENST00000357857 MINPP1Q9UNW1 487 aa22.68■■□□□ 1.22
CLN3-204ENST00000357857 GRAPQ13588 217 aa22.68■■□□□ 1.22
CLN3-204ENST00000357857 GRAPLQ8TC17 118 aaPredicted RBP22.68■■□□□ 1.22
CLN3-204ENST00000357857 REC8O95072 547 aa22.67■■□□□ 1.22
CLN3-204ENST00000357857 FSD1Q9BTV5 496 aa22.67■■□□□ 1.22
CLN3-204ENST00000357857 AKAP11Q9UKA4 1901 aa22.67■■□□□ 1.22
CLN3-204ENST00000357857 KLRG2A4D1S0 409 aaPredicted RBP22.66■■□□□ 1.22
CLN3-204ENST00000357857 EDC3Q96F86 508 aaKnown RBP22.66■■□□□ 1.22
CLN3-204ENST00000357857 RBM17Q96I25 401 aaKnown RBP22.66■■□□□ 1.22
CLN3-204ENST00000357857 DIAPH3Q9NSV4 1193 aa22.66■■□□□ 1.22
CLN3-204ENST00000357857 NDUFB9Q9Y6M9 179 aa22.66■■□□□ 1.22
CLN3-204ENST00000357857 HIP1O00291 1037 aa22.65■■□□□ 1.22
CLN3-204ENST00000357857 BRIP1Q9BX63 1249 aa22.65■■□□□ 1.22
CLN3-204ENST00000357857 SNAP23O00161 211 aa22.65■■□□□ 1.22
CLN3-204ENST00000357857 ZNF512BQ96KM6 892 aaPredicted RBP22.65■■□□□ 1.22
CLN3-204ENST00000357857 ANKRD2Q9GZV1 360 aa22.65■■□□□ 1.22
CLN3-204ENST00000357857 PAG1Q9NWQ8 432 aa22.65■■□□□ 1.22
CLN3-204ENST00000357857 UBE4AQ14139 1066 aa22.64■■□□□ 1.21
CLN3-204ENST00000357857 RFX7Q2KHR2 1363 aa22.64■■□□□ 1.21
CLN3-204ENST00000357857 GOLIM4O00461 696 aa22.63■■□□□ 1.21
CLN3-204ENST00000357857 HOXA10P31260 410 aaPredicted RBP22.63■■□□□ 1.21
CLN3-204ENST00000357857 RBM25P49756 843 aaKnown RBP22.63■■□□□ 1.21
CLN3-204ENST00000357857 CCDC102BQ68D86 513 aa22.63■■□□□ 1.21
CLN3-204ENST00000357857 RUFY2Q8WXA3 655 aa22.63■■□□□ 1.21
CLN3-204ENST00000357857 UQCRFS1P1P0C7P4 283 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 PHKA1P46020 1223 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 CWC27Q6UX04 472 aaKnown RBP22.62■■□□□ 1.21
CLN3-204ENST00000357857 USP26Q9BXU7 913 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 SGSM2O43147 1006 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 ARID4AP29374 1257 aaPredicted RBP22.62■■□□□ 1.21
CLN3-204ENST00000357857 KBTBD3Q8NAB2 608 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 CRAMP1Q96RY5 1269 aa22.62■■□□□ 1.21
CLN3-204ENST00000357857 MYH7P12883 1935 aa22.61■■□□□ 1.21
CLN3-204ENST00000357857 COL11A2P13942 1736 aaPredicted RBP22.61■■□□□ 1.21
CLN3-204ENST00000357857 PDE6BP35913 854 aa22.61■■□□□ 1.21
CLN3-204ENST00000357857 FKBP4Q02790 459 aaKnown RBP eCLIP22.61■■□□□ 1.21
CLN3-204ENST00000357857 SCARF1Q14162 830 aa22.61■■□□□ 1.21
CLN3-204ENST00000357857 MCAMP43121 646 aa22.6■■□□□ 1.21
CLN3-204ENST00000357857 SNRKQ9NRH2 765 aa22.6■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms