RNA–Protein interactions for RNA: ENST00000355480.9

COL18A1-202, Transcript of collagen type XVIII alpha 1 chain, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene COL18A1, Length 5,924 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-202ENST00000355480 SPAG5Q96R06 1193 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 KDM5BQ9UGL1 1544 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 GOLGA6L9A6NEM1 432 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 ZSCAN22P10073 491 aaPredicted RBP20.6■□□□□ 0.89
COL18A1-202ENST00000355480 RBM27Q9P2N5 1060 aaKnown RBP20.6■□□□□ 0.89
COL18A1-202ENST00000355480 PDE1AP54750 535 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 TPTE2Q6XPS3 522 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 WWC3Q9ULE0 1092 aa20.6■□□□□ 0.89
COL18A1-202ENST00000355480 NF2P35240 595 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 LRRC59Q96AG4 307 aaKnown RBP20.59■□□□□ 0.89
COL18A1-202ENST00000355480 ZC3H12CQ9C0D7 883 aaKnown RBP20.59■□□□□ 0.89
COL18A1-202ENST00000355480 HOMER2Q9NSB8 354 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 FSD2A1L4K1 749 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 KRT13P13646 458 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 LMAN1P49257 510 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 TFCP2L1Q9NZI6 479 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 Q6ZUG5 572 aa20.59■□□□□ 0.89
COL18A1-202ENST00000355480 IFI16Q16666 785 aaKnown RBP20.59■□□□□ 0.89
COL18A1-202ENST00000355480 RTCBQ9Y3I0 505 aaKnown RBP20.59■□□□□ 0.89
COL18A1-202ENST00000355480 SNW1Q13573 536 aaKnown RBP20.58■□□□□ 0.89
COL18A1-202ENST00000355480 PLS1Q14651 629 aa20.58■□□□□ 0.89
COL18A1-202ENST00000355480 PABPN1LA6NDY0 278 aaKnown RBP20.58■□□□□ 0.89
COL18A1-202ENST00000355480 POTEB2H3BUK9 544 aa20.58■□□□□ 0.89
COL18A1-202ENST00000355480 KCNG4Q8TDN1 519 aa20.58■□□□□ 0.89
COL18A1-202ENST00000355480 PAG1Q9NWQ8 432 aa20.58■□□□□ 0.89
COL18A1-202ENST00000355480 RALGAPBQ86X10 1494 aa20.58■□□□□ 0.89
COL18A1-202ENST00000355480 ATP8B2P98198 1209 aa20.58■□□□□ 0.88
COL18A1-202ENST00000355480 RBM26Q5T8P6 1007 aaKnown RBP20.58■□□□□ 0.88
COL18A1-202ENST00000355480 PARP3Q9Y6F1 533 aa20.58■□□□□ 0.88
COL18A1-202ENST00000355480 RPRD2Q5VT52 1461 aaKnown RBP20.58■□□□□ 0.88
COL18A1-202ENST00000355480 CALM1P0DP23 149 aa20.58■□□□□ 0.88
COL18A1-202ENST00000355480 CALM2P0DP24 149 aa20.58■□□□□ 0.88
COL18A1-202ENST00000355480 CALM3P0DP25 149 aa20.58■□□□□ 0.88
COL18A1-202ENST00000355480 HDAC1Q13547 482 aaPredicted RBP20.58■□□□□ 0.88
COL18A1-202ENST00000355480 EIF4A2Q14240 407 aaKnown RBP20.58■□□□□ 0.88
COL18A1-202ENST00000355480 CAVIN2O95810 425 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 C8orf58Q8NAV2 365 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 NSFL1CQ9UNZ2 370 aaKnown RBP20.57■□□□□ 0.88
COL18A1-202ENST00000355480 UHRF1BP1LA0JNW5 1464 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 NFATC2IPQ8NCF5 419 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 PA2G4Q9UQ80 394 aaKnown RBP20.57■□□□□ 0.88
COL18A1-202ENST00000355480 C6orf50Q9HD87 102 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 MAATS1Q7Z4T9 603 aa20.57■□□□□ 0.88
COL18A1-202ENST00000355480 GIMAP6Q6P9H5 292 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 ESYT1Q9BSJ8 1104 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 SBNO2Q9Y2G9 1366 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 ANKRD44Q8N8A2 993 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 CGNQ9P2M7 1197 aaKnown RBP20.56■□□□□ 0.88
COL18A1-202ENST00000355480 ASIC1P78348 528 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 EHBP1Q8NDI1 1231 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 UBASH3AP57075 661 aa20.56■□□□□ 0.88
COL18A1-202ENST00000355480 POLR3GO15318 223 aaPredicted RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 KIAA0753Q2KHM9 967 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 TSNARE1Q96NA8 513 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 TBC1D32Q96NH3 1257 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 TCHPQ9BT92 498 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP20.55■□□□□ 0.885e-8■■■□□ 15.4
COL18A1-202ENST00000355480 CCDC175P0C221 793 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 POLD1P28340 1107 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 GNG11P61952 73 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 MCM9Q9NXL9 1143 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 IRS4O14654 1257 aaPredicted RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 MRPL50Q8N5N7 158 aaKnown RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 HELBQ8NG08 1087 aaPredicted RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 JDP2Q8WYK2 163 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 MTHFSDQ2M296 383 aaKnown RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 HSP90AA4PQ58FG1 418 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 ZNF354CQ86Y25 554 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 SPDYE3A6NKU9 549 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 NMIQ13287 307 aaPredicted RBP20.55■□□□□ 0.88
COL18A1-202ENST00000355480 CTAGE1Q96RT6 745 aa20.55■□□□□ 0.88
COL18A1-202ENST00000355480 MARCKSP29966 332 aaPredicted RBP20.54■□□□□ 0.88
COL18A1-202ENST00000355480 RNF187Q5TA31 235 aaPredicted RBP20.54■□□□□ 0.88
COL18A1-202ENST00000355480 MIGA1Q8NAN2 632 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 IKBKGQ9Y6K9 419 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 RIMBP2O15034 1052 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 PLCG2P16885 1265 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 GNAT2P19087 354 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 PLVAPQ9BX97 442 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 CTR9Q6PD62 1173 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 MRPS27Q92552 414 aaKnown RBP20.54■□□□□ 0.88
COL18A1-202ENST00000355480 RRP36Q96EU6 259 aaKnown RBP20.54■□□□□ 0.88
COL18A1-202ENST00000355480 LINS1Q8NG48 757 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 ZSWIM4Q9H7M6 989 aa20.54■□□□□ 0.88
COL18A1-202ENST00000355480 RGS22Q8NE09 1264 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 MRVI1Q9Y6F6 885 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 PSMA7O14818 248 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 HCLS1P14317 486 aaPredicted RBP20.53■□□□□ 0.88
COL18A1-202ENST00000355480 MAGEB6Q8N7X4 407 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 CNPY2Q9Y2B0 182 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 B4DLN1 442 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 MRPL12P52815 198 aaKnown RBP20.53■□□□□ 0.88
COL18A1-202ENST00000355480 MAP3K9P80192 1104 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 ZRANB1Q9UGI0 708 aa20.53■□□□□ 0.88
COL18A1-202ENST00000355480 TTC16Q8NEE8 873 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 IMPG2Q9BZV3 1241 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 RTL9Q8NET4 1388 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 RIMS2Q9UQ26 1411 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 WDR7Q9Y4E6 1490 aa20.52■□□□□ 0.88
COL18A1-202ENST00000355480 CYLC1P35663 651 aaPredicted RBP20.52■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 17.1 ms