RNA–Protein interactions for RNA: ENST00000335551.11

CSMD1-201, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 12,134 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-201ENST00000335551 SPTY2D1Q68D10 685 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 VPS52Q8N1B4 723 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC26Q8TAB7 109 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 BIN1O00499 593 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 CAPZA3Q96KX2 299 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 WDR97A6NE52 1622 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 TBCAO75347 108 aaKnown RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 MICAL1Q8TDZ2 1067 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 ERICH3Q5RHP9 1530 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 KIF1BPQ96EK5 621 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 FGD6Q6ZV73 1430 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 PHACTR2O75167 634 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 PPP1R7Q15435 360 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 PLEKHO1Q53GL0 409 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 UBLCP1Q8WVY7 318 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 NCAPGQ9BPX3 1015 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 NUTM2FA1L443 756 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 HSP90AA5PQ58FG0 334 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 TPX2Q9ULW0 747 aaKnown RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 EXOSC9Q06265 439 aaKnown RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 TCERG1LQ5VWI1 586 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 RUFY4Q6ZNE9 571 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA6BA6NDN3 693 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 HSPA1LP34931 641 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 MAP3K7CLP57077 242 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 SYCP3Q8IZU3 236 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 FAF1Q9UNN5 650 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 CRCPO75575 148 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 XRCC6P12956 609 aaKnown RBP eCLIP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 HPDP32754 393 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 PPM1FP49593 454 aaPredicted RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 CHMP4BP1P59074 171 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 IFT20Q8IY31 132 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 ARHGEF2Q92974 986 aaKnown RBP6.98□□□□□ -1.29
CSMD1-201ENST00000335551 HAUS8Q9BT25 410 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 CSRNP2Q9H175 543 aa6.98□□□□□ -1.29
CSMD1-201ENST00000335551 SDCCAG8Q86SQ7 713 aaPredicted RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 HOMEZQ8IX15 550 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 BICDL2A1A5D9 508 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 USP5P45974 858 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 PDCD7Q8N8D1 485 aaKnown RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 TACC3Q9Y6A5 838 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 ZNF131P52739 623 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 RPAP2Q8IXW5 612 aaPredicted RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 RASEFQ8IZ41 740 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 MSANTD4Q8NCY6 345 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 CDCA7LQ96GN5 454 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 FGD5Q6ZNL6 1462 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 GAS8O95995 478 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 RILPL1Q5EBL4 403 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 GPRASP1Q5JY77 1395 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 CCT6BQ92526 530 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 CCDC42Q96M95 316 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 UTP11Q9Y3A2 253 aaKnown RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 VGLL3A8MV65 326 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 SH3BP5O60239 455 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 TMEM57Q8N5G2 664 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 TBC1D31Q96DN5 1066 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 NAA16Q6N069 864 aaPredicted RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 EIF2AQ9BY44 585 aaKnown RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 HECW1Q76N89 1606 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 GOLGA8AA7E2F4 631 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 SLC4A8Q2Y0W8 1093 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 BICD1Q96G01 975 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 PFDN4Q9NQP4 134 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 ACTN4O43707 911 aaKnown RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 PRKAR2BP31323 418 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 TTF1Q15361 905 aaPredicted RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 SEL1L2Q5TEA6 688 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 SMARCC2Q8TAQ2 1214 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 IFT81Q8WYA0 676 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 GJB2P29033 226 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 UBA7P41226 1012 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 PNMA8AQ86V59 439 aaPredicted RBP6.97□□□□□ -1.29
CSMD1-201ENST00000335551 NAPBQ9H115 298 aa6.97□□□□□ -1.29
CSMD1-201ENST00000335551 PSMA7O14818 248 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 ARHGAP30Q7Z6I6 1101 aaPredicted RBP6.96□□□□□ -1.29
CSMD1-201ENST00000335551 LRP2BPQ9P2M1 347 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 PUF60Q9UHX1 559 aaKnown RBP6.96□□□□□ -1.29
CSMD1-201ENST00000335551 RHOXF2BP0C7M4 288 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 FLIIQ13045 1269 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 INF2Q27J81 1249 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 RHOXF2Q9BQY4 288 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 TBC1D32Q96NH3 1257 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 ANKRD12Q6UB98 2062 aa6.96□□□□□ -1.29
CSMD1-201ENST00000335551 SNCBQ16143 134 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 PDCD2Q16342 344 aaPredicted RBP6.96□□□□□ -1.3
CSMD1-201ENST00000335551 ZNF622Q969S3 477 aaKnown RBP eCLIP6.96□□□□□ -1.36e-7■■□□□ 11.7
CSMD1-201ENST00000335551 ABCC11Q96J66 1382 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 HIP1RO75146 1068 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 MTHFSP49914 203 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 MTMR3Q13615 1198 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 CEP126Q9P2H0 1117 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 PPFIA4O75335 1185 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 FAM160A1Q05DH4 1040 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 TYRO3Q06418 890 aa6.96□□□□□ -1.3
CSMD1-201ENST00000335551 C16orf71Q8IYS4 520 aaPredicted RBP6.96□□□□□ -1.3
CSMD1-201ENST00000335551 TSR2Q969E8 191 aaKnown RBP6.96□□□□□ -1.3
CSMD1-201ENST00000335551 LRPPRCP42704 1394 aaKnown RBP6.96□□□□□ -1.3
CSMD1-201ENST00000335551 BCAR3O75815 825 aa6.96□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms