RNA–Protein interactions for RNA: ENST00000328923.7

SHMT2-201, Transcript of serine hydroxymethyltransferase 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHMT2, Length 2,537 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-201ENST00000328923 SOCS7O14512 581 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 CCZ1BP86790 482 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 CCZ1P86791 482 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 GBP6Q6ZN66 633 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 MBIPQ9NS73 344 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 MAP2P11137 1827 aaKnown RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 CHD2O14647 1828 aaKnown RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 DLG5Q8TDM6 1919 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 EPB41L2O43491 1005 aaKnown RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 ERLIN2O94905 339 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 ANO6Q4KMQ2 910 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 CCDC30Q5VVM6 783 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 CEP85Q6P2H3 762 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 C16orf71Q8IYS4 520 aaPredicted RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 FUT8Q9BYC5 575 aa13.79□□□□□ -0.2
SHMT2-201ENST00000328923 MKRN1Q9UHC7 482 aaKnown RBP13.79□□□□□ -0.2
SHMT2-201ENST00000328923 TOPAZ1Q8N9V7 1692 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 CAND2O75155 1236 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 ELF1P32519 619 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 LIG3P49916 1009 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 CAMK4Q16566 473 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 AMOTL2Q9Y2J4 779 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 RPS6KL1Q9Y6S9 549 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 NPHP4O75161 1426 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-201ENST00000328923 ANKRD33BA6NCL7 494 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 CCDC69A6NI79 296 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 TBC1D8BQ0IIM8 1120 aa13.78□□□□□ -0.2
SHMT2-201ENST00000328923 OTUD7AQ8TE49 926 aaPredicted RBP13.78□□□□□ -0.2
SHMT2-201ENST00000328923 TADA3O75528 432 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 IRX1P78414 480 aaPredicted RBP13.77□□□□□ -0.21
SHMT2-201ENST00000328923 NME9Q86XW9 330 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 FBLN1P23142 703 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 CCDC158Q5M9N0 1113 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 IRAK4Q9NWZ3 460 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 AKAP2Q9Y2D5 859 aa13.77□□□□□ -0.21
SHMT2-201ENST00000328923 PIP4K2BP78356 416 aa13.76□□□□□ -0.21
SHMT2-201ENST00000328923 SKIDA1Q1XH10 827 aa13.76□□□□□ -0.21
SHMT2-201ENST00000328923 CKAP2LQ8IYA6 745 aa13.76□□□□□ -0.21
SHMT2-201ENST00000328923 N4BP2L2Q92802 583 aaPredicted RBP13.76□□□□□ -0.21
SHMT2-201ENST00000328923 TATDN2Q93075 761 aa13.76□□□□□ -0.21
SHMT2-201ENST00000328923 CHMP3Q9Y3E7 222 aa13.76□□□□□ -0.21
SHMT2-201ENST00000328923 NEMFO60524 1076 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 SCRN1Q12765 414 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 ARFGAP3Q9NP61 516 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 USP8P40818 1118 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 MAP3K11Q16584 847 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 JAKMIP3Q5VZ66 844 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 TDRD7Q8NHU6 1098 aaKnown RBP13.75□□□□□ -0.21
SHMT2-201ENST00000328923 NBPF3Q9H094 633 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 ETAA1Q9NY74 926 aa13.75□□□□□ -0.21
SHMT2-201ENST00000328923 CDK12Q9NYV4 1490 aaPredicted RBP13.75□□□□□ -0.21
SHMT2-201ENST00000328923 SGSM2O43147 1006 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 HMMRO75330 724 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 CCNHP51946 323 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-201ENST00000328923 EVCP57679 992 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 TEX11Q8IYF3 940 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 STAG1Q8WVM7 1258 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 PPP1R13BQ96KQ4 1090 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 ESYT1Q9BSJ8 1104 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 CARD6Q9BX69 1037 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 PDE11AQ9HCR9 933 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 ZRANB1Q9UGI0 708 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 USP16Q9Y5T5 823 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 NRKQ7Z2Y5 1582 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 CDC25BP30305 580 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 EIF5P55010 431 aaKnown RBP13.74□□□□□ -0.21
SHMT2-201ENST00000328923 ERC1Q8IUD2 1116 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 CTCFLQ8NI51 663 aaPredicted RBP13.74□□□□□ -0.21
SHMT2-201ENST00000328923 THOC1Q96FV9 657 aaKnown RBP13.74□□□□□ -0.21
SHMT2-201ENST00000328923 MCM8Q9UJA3 840 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 STRCP1A6NGW2 1772 aa13.74□□□□□ -0.21
SHMT2-201ENST00000328923 NUTM2FA1L443 756 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 N4BP1O75113 896 aaKnown RBP13.73□□□□□ -0.21
SHMT2-201ENST00000328923 PDE1AP54750 535 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 NEDD9Q14511 834 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 NWD1Q149M9 1564 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 C8orf58Q8NAV2 365 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 COG3Q96JB2 828 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 VEZTQ9HBM0 779 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 FAN1Q9Y2M0 1017 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 KIAA0232Q92628 1395 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 PLEKHG3A1L390 1219 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 EME2A4GXA9 379 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-201ENST00000328923 TOM1O60784 492 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 ZSCAN22P10073 491 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-201ENST00000328923 E4F1Q66K89 784 aaPredicted RBP13.73□□□□□ -0.21
SHMT2-201ENST00000328923 ISM2Q6H9L7 571 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 PHACTR3Q96KR7 559 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 MSH6P52701 1360 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 ACEP12821 1306 aa13.73□□□□□ -0.21
SHMT2-201ENST00000328923 CTAGE5O15320 804 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 IPO7O95373 1038 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 GCFC2P16383 781 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 GPTP24298 496 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 AP1ARQ63HQ0 302 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 BICC1Q9H694 974 aaKnown RBP13.72□□□□□ -0.21
SHMT2-201ENST00000328923 KCND1Q9NSA2 647 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 EFCAB8A8MWE9 144 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 PPFIA4O75335 1185 aa13.72□□□□□ -0.21
SHMT2-201ENST00000328923 ERCC3P19447 782 aa13.72□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 1665.5 ms