RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 NECTIN1Q15223 517 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 CCDC129Q6ZRS4 1044 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 Q6ZUG5 572 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 BRF1Q92994 677 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 MPHOSPH8Q99549 860 aa19.17■□□□□ 0.66
CTCF-201ENST00000264010 RNF113AO15541 343 aaKnown RBP19.16■□□□□ 0.66
CTCF-201ENST00000264010 CCDC192P0DO97 292 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 CFAP45Q9UL16 551 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 MEGF6O75095 1541 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 KDM6AO15550 1401 aaPredicted RBP19.16■□□□□ 0.66
CTCF-201ENST00000264010 H7C1W4 665 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 DNM1Q05193 864 aaKnown RBP19.16■□□□□ 0.66
CTCF-201ENST00000264010 AEBP2Q6ZN18 517 aaPredicted RBP19.16■□□□□ 0.66
CTCF-201ENST00000264010 TMEM63CQ9P1W3 806 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 HMGN5P82970 282 aaKnown RBP19.16■□□□□ 0.66
CTCF-201ENST00000264010 SASS6Q6UVJ0 657 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 FAM89AQ96GI7 184 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 KAZALD1Q96I82 304 aa19.16■□□□□ 0.66
CTCF-201ENST00000264010 CCDC73Q6ZRK6 1079 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 ZNF396Q96N95 335 aaPredicted RBP19.15■□□□□ 0.66
CTCF-201ENST00000264010 ATP2B3Q16720 1220 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 ME3Q16798 604 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 RBSNQ9H1K0 784 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 CPDO75976 1380 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 TAF5LO75529 589 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 TTC14Q96N46 770 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 GPR108Q9NPR9 543 aa19.15■□□□□ 0.66
CTCF-201ENST00000264010 SYNE3Q6ZMZ3 975 aa19.14■□□□□ 0.66
CTCF-201ENST00000264010 NUP62CLQ9H1M0 184 aa19.14■□□□□ 0.66
CTCF-201ENST00000264010 IDH1O75874 414 aaKnown RBP19.14■□□□□ 0.65
CTCF-201ENST00000264010 FAM208AQ9UK61 1670 aaKnown RBP19.14■□□□□ 0.65
CTCF-201ENST00000264010 ZNF335Q9H4Z2 1342 aaPredicted RBP19.13■□□□□ 0.65
CTCF-201ENST00000264010 RABL6Q3YEC7 729 aaPredicted RBP19.13■□□□□ 0.65
CTCF-201ENST00000264010 LRRC2Q9BYS8 371 aa19.13■□□□□ 0.65
CTCF-201ENST00000264010 NFXL1Q6ZNB6 911 aa19.13■□□□□ 0.65
CTCF-201ENST00000264010 TNMDQ9H2S6 317 aa19.13■□□□□ 0.65
CTCF-201ENST00000264010 DHX32Q7L7V1 743 aaKnown RBP19.13■□□□□ 0.65
CTCF-201ENST00000264010 NBPF26B4DH59 902 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 NBPF14Q5TI25 921 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 NBPF10Q6P3W6 841 aaKnown RBP19.12■□□□□ 0.65
CTCF-201ENST00000264010 NBPF15Q8N660 670 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 TPCN1Q9ULQ1 816 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 LRRC37A3O60309 1634 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 ADAMTS2O95450 1211 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 CEBPZQ03701 1054 aaKnown RBP19.12■□□□□ 0.65
CTCF-201ENST00000264010 TFIP11Q9UBB9 837 aaKnown RBP19.12■□□□□ 0.65
CTCF-201ENST00000264010 KAT6BQ8WYB5 2073 aa19.12■□□□□ 0.65
CTCF-201ENST00000264010 GADD45BO75293 160 aaPredicted RBP19.12■□□□□ 0.65
CTCF-201ENST00000264010 ZNF589Q86UQ0 364 aaPredicted RBP19.12■□□□□ 0.65
CTCF-201ENST00000264010 TTF1Q15361 905 aaPredicted RBP19.11■□□□□ 0.65
CTCF-201ENST00000264010 MAP3K11Q16584 847 aa19.11■□□□□ 0.65
CTCF-201ENST00000264010 NUTM2BA6NNL0 878 aaPredicted RBP19.11■□□□□ 0.65
CTCF-201ENST00000264010 NUTM2EB1AL46 878 aaPredicted RBP19.11■□□□□ 0.65
CTCF-201ENST00000264010 GOLGA6L19H0YKK7 550 aa19.11■□□□□ 0.65
CTCF-201ENST00000264010 LRRC24Q50LG9 513 aa19.11■□□□□ 0.65
CTCF-201ENST00000264010 NUTM2AQ8IVF1 878 aaPredicted RBP19.11■□□□□ 0.65
CTCF-201ENST00000264010 IRS4O14654 1257 aaPredicted RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 ZNF213O14771 459 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 CCT2P78371 535 aaKnown RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 TRIM29Q14134 588 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 ATG3Q9NT62 314 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 ZNF142P52746 1687 aaPredicted RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 CIAO1O76071 339 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 PCCAP05165 728 aaPredicted RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 UVSSAQ2YD98 709 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 SEC62Q99442 399 aaKnown RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 FBXO3Q9UK99 471 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 ASAP1Q9ULH1 1129 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 DZIP3Q86Y13 1208 aaKnown RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 ZSCAN16Q9H4T2 348 aaPredicted RBP19.1■□□□□ 0.65
CTCF-201ENST00000264010 MTMR6Q9Y217 621 aa19.1■□□□□ 0.65
CTCF-201ENST00000264010 XAGE2Q96GT9 111 aa19.09■□□□□ 0.65
CTCF-201ENST00000264010 IGHMBP2P38935 993 aaKnown RBP19.09■□□□□ 0.65
CTCF-201ENST00000264010 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP19.09■□□□□ 0.65
CTCF-201ENST00000264010 LARGE1O95461 756 aa19.09■□□□□ 0.65
CTCF-201ENST00000264010 VPS37DQ86XT2 251 aa19.09■□□□□ 0.65
CTCF-201ENST00000264010 DSCC1Q9BVC3 393 aa19.09■□□□□ 0.65
CTCF-201ENST00000264010 PLEKHG2Q9H7P9 1386 aa19.09■□□□□ 0.65
CTCF-201ENST00000264010 BECN2A8MW95 431 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 SLC5A1P13866 664 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 HAND2P61296 217 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 ADAMTSL3P82987 1691 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 UQCRFS1P1P0C7P4 283 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 ZBTB38Q8NAP3 1195 aaPredicted RBP19.08■□□□□ 0.65
CTCF-201ENST00000264010 AIDAQ96BJ3 306 aa19.08■□□□□ 0.65
CTCF-201ENST00000264010 DTNBO60941 627 aa19.08■□□□□ 0.64
CTCF-201ENST00000264010 KINO60870 393 aaKnown RBP19.07■□□□□ 0.64
CTCF-201ENST00000264010 RFX5P48382 616 aaPredicted RBP19.07■□□□□ 0.64
CTCF-201ENST00000264010 DDX19AQ9NUU7 478 aaKnown RBP19.07■□□□□ 0.64
CTCF-201ENST00000264010 ITGA6P23229 1130 aa19.07■□□□□ 0.64
CTCF-201ENST00000264010 HS1BP3Q53T59 392 aa19.07■□□□□ 0.64
CTCF-201ENST00000264010 GIMAP6Q6P9H5 292 aa19.07■□□□□ 0.64
CTCF-201ENST00000264010 PPP1R9BQ96SB3 815 aa19.07■□□□□ 0.64
CTCF-201ENST00000264010 FOXO4P98177 505 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 ERICH2A1L162 156 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 DDB1Q16531 1140 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 PUS3Q9BZE2 481 aaKnown RBP19.06■□□□□ 0.64
CTCF-201ENST00000264010 NACAP1Q9BZK3 213 aa19.06■□□□□ 0.64
CTCF-201ENST00000264010 SOS2Q07890 1332 aaPredicted RBP19.06■□□□□ 0.64
CTCF-201ENST00000264010 MAP3K15Q6ZN16 1313 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 13.6 ms