RNA–Protein interactions for RNA: ENST00000461743.1

VPS52-213, Transcript of VPS52, GARP complex subunit, humanhuman

TSL 3

Gene VPS52, Length 547 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS52-213ENST00000461743 NRN1LQ496H8 165 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 FAM98BQ52LJ0 330 aaKnown RBP10.4□□□□□ -0.74
VPS52-213ENST00000461743 ADAM5Q6NVV9 412 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 PODNL1Q6PEZ8 512 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 TMEM108Q6UXF1 575 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 ZNF704Q6ZNC4 412 aaPredicted RBP10.4□□□□□ -0.74
VPS52-213ENST00000461743 LINGO2Q7L985 606 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 OAFQ86UD1 273 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 AQP12AQ8IXF9 295 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 FAM169BQ8N8A8 192 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 NOXO1Q8NFA2 376 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 OR4K5Q8NGD3 323 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 OR6N1Q8NGY5 312 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 FNDC8Q8TC99 324 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 ASB10Q8WXI3 467 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 TMEM54Q969K7 222 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 GPX7Q96SL4 187 aaPredicted RBP10.4□□□□□ -0.74
VPS52-213ENST00000461743 ULBP2Q9BZM5 246 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 MMADHCQ9H3L0 296 aaPredicted RBP10.4□□□□□ -0.74
VPS52-213ENST00000461743 TXNIPQ9H3M7 391 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 CRLF2Q9HC73 371 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 ST6GALNAC2Q9UJ37 374 aa10.4□□□□□ -0.74
VPS52-213ENST00000461743 TRBV4-1A0A0J9YWV2 114 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 SH3PXD2BA1X283 911 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 ACOT8O14734 319 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 SERPINI2O75830 405 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 RAF1P04049 648 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 RAP2AP10114 183 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 DNASE1P24855 282 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 AQP2P41181 271 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 GPR4P46093 362 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 ZNF133P52736 654 aaPredicted RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 FOXG1P55316 489 aaPredicted RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 UBE2NP61088 152 aaKnown RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 CHRNB3Q05901 458 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 BSPH1Q075Z2 132 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 LGALS3BPQ08380 585 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 CAMK2DQ13557 499 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 HIST3H3Q16695 136 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 TBRG1Q3YBR2 411 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 C9orf135Q5VTT2 229 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 PGM2L1Q6PCE3 622 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 OR52N5Q8NH56 324 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 ZFAND2BQ8WV99 257 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 NANOS1Q8WY41 292 aaKnown RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 BCL2L2Q92843 193 aaPredicted RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 MBD6Q96DN6 1003 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 TXNDC15Q96J42 360 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 HS3ST6Q96QI5 342 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 ALG12Q9BV10 488 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 EMC6Q9BV81 110 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 NELFAQ9H3P2 528 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 DENND2DQ9H6A0 471 aaPredicted RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 SMURF2Q9HAU4 748 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 GLTPQ9NZD2 209 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 NPAP1Q9NZP6 1156 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 FBXL3Q9UKT7 428 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 TMCC3Q9ULS5 477 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 AURKCQ9UQB9 309 aa10.39□□□□□ -0.75
VPS52-213ENST00000461743 MAP1AP78559 2803 aaPredicted RBP10.39□□□□□ -0.75
VPS52-213ENST00000461743 A0A1W2PPR1 153 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 A6NIZ1 184 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 M0R3G1 203 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 CDC42EP2O14613 210 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 NDUFB2O95178 105 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 F13BP05160 661 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 FUT4P22083 530 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 FPR3P25089 353 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 RRM2P31350 389 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 OMPP47874 163 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 HMGA2P52926 109 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 CLRN1P58418 232 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 RAP1BP61224 184 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 RPL27P61353 136 aaKnown RBP10.38□□□□□ -0.75
VPS52-213ENST00000461743 RAP1AP62834 184 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 MS4A2Q01362 244 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 FLOT2Q14254 428 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 MELKQ14680 651 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ACKR1Q16570 336 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ZBED5Q49AG3 693 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 C10orf128Q5T292 105 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ARMC4Q5T2S8 1044 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 CARD17Q5XLA6 110 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ASRGL1Q7L266 308 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 DPPA2Q7Z7J5 298 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 WDR31Q8NA23 367 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 LRRC75AQ8NAA5 344 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 OR13C2Q8NGS9 318 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 MOSPD2Q8NHP6 518 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 FAM46AQ96IP4 442 aaKnown RBP10.38□□□□□ -0.75
VPS52-213ENST00000461743 CLPTM1LQ96KA5 538 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ALPK1Q96QP1 1244 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 MRPL13Q9BYD1 178 aaKnown RBP10.38□□□□□ -0.75
VPS52-213ENST00000461743 LRMDAQ9H2I8 198 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 CRNNQ9UBG3 495 aaPredicted RBP10.38□□□□□ -0.75
VPS52-213ENST00000461743 POFUT2Q9Y2G5 429 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 VPS13CQ709C8 3753 aa10.38□□□□□ -0.75
VPS52-213ENST00000461743 ITPR3Q14573 2671 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 TRAV27A0A087WT01 109 aa10.37□□□□□ -0.75
VPS52-213ENST00000461743 DHRS12A0PJE2 317 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms