RNA–Protein interactions for RNA: ENST00000366942.3

USH2A-202, Transcript of usherin, humanhuman

TSL 1 (best) BASIC

Gene USH2A, Length 6,320 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-202ENST00000366942 SEBOXQ9HB31 216 aaPredicted RBP3.75□□□□□ -1.81
USH2A-202ENST00000366942 NTMQ9P121 344 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 SLC7A8Q9UHI5 535 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 A3GALT2U3KPV4 340 aa3.75□□□□□ -1.81
USH2A-202ENST00000366942 XRN1Q8IZH2 1706 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 A0A0U1RQK1 487 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ZNF320A2RRD8 509 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 GLOD5A6NK44 160 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CEBPZOSA8MTT3 80 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 BHMG1C9JSJ3 638 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 SAP18O00422 153 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 ARPC1BO15143 372 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 FZD6O60353 706 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ZNF821O75541 412 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 PLATP00750 562 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PNLIPRP2P54317 469 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PCBP3P57721 371 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 GRB2P62993 217 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 LIPEQ05469 1076 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 FUT7Q11130 342 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 DUSP8Q13202 625 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CLEC12BQ2HXU8 276 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SIRPB2Q5JXA9 342 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TIGD3Q6B0B8 471 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ETFRF1Q6IPR1 90 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 RHBDD2Q6NTF9 364 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ZFP1Q6P2D0 407 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TMEM173Q86WV6 379 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 CALHM3Q86XJ0 350 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 AMER2Q8N7J2 671 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR5K2Q8NHB8 316 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 APOBEC3DQ96AK3 386 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 PKP2Q99959 881 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 BOCQ9BWV1 1114 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 C1QTNF6Q9BXI9 259 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ACSS3Q9H6R3 686 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 UCK1Q9HA47 277 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 FBXO34Q9NWN3 711 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 MITFO75030 526 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 RECKO95980 971 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PENKP01210 267 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 CSF1P09603 554 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 HLA-FP30511 346 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ACTG2P63267 376 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CRYZQ08257 329 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 RIPPLY1Q0D2K3 151 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TRAM1Q15629 374 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 INO80CQ6PI98 192 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 BTNL8Q6UX41 500 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 IZUMO2Q6UXV1 221 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SERPINA11Q86U17 422 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 STPG3Q8N7X2 389 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR52E2Q8NGJ4 325 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 GNPDA2Q8TDQ7 276 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 R3HDM4Q96D70 268 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TMEM56Q96MV1 263 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ERMAPQ96PL5 475 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR52B2Q96RD2 323 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 HAPLN2Q9GZV7 340 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR51I1Q9H343 314 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TOR3AQ9H497 397 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 FGF22Q9HCT0 170 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 NDUFAF4Q9P032 175 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 RALYQ9UKM9 306 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 TEX264Q9Y6I9 313 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TRAV20A0A0B4J274 112 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 IGKV6-21A0A0C4DH24 114 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 LRRC3CA6NJW4 275 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SGCEO43556 437 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 UBOX5O94941 541 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CTXN2P0C2S0 81 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PSMB9P28065 219 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 GRIA1P42261 906 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ARSDP51689 593 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 UGT8Q16880 541 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PDLIM3Q53GG5 364 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 COQ5Q5HYK3 327 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SAXO2Q658L1 398 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 FCRLBQ6BAA4 426 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CCDC103Q8IW40 242 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR5M1Q8NGP8 315 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR6Q1Q8NGQ2 317 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 OR1L6Q8NGR2 347 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 HUS1BQ8NHY5 278 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 MAL2Q969L2 176 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TOMM40LQ969M1 308 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 RMI2Q96E14 147 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 INSM2Q96T92 566 aaPredicted RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 MECRQ9BV79 373 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 NUAK2Q9H093 628 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SLC38A1Q9H2H9 487 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PNPLA3Q9NST1 481 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 GPATCH2Q9NW75 528 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 CHRNA9Q9UGM1 479 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TBC1D24Q9ULP9 559 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 PTGDR2Q9Y5Y4 395 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 SPTBN1Q01082 2364 aaKnown RBP3.74□□□□□ -1.81
USH2A-202ENST00000366942 KIR2DS1A0A191URI9 304 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 TCRBV4S1A1TA0A5B7 111 aa3.74□□□□□ -1.81
USH2A-202ENST00000366942 ANTXRLA6NF34 631 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 30.6 ms