RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 INIPQ9NRY2 104 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 HIF3AQ9Y2N7 669 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 A0A1W2PQM1 296 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 H7C1C5 153 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 SIGLEC6O43699 453 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 GALP22466 123 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 RFX2P48378 723 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 LCN6P62502 163 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 CCL7P80098 99 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 RPL18Q07020 188 aaKnown RBP14.86□□□□□ -0.03
COL4A1-204ENST00000543140 DMKNQ6E0U4 476 aaPredicted RBP14.86□□□□□ -0.03
COL4A1-204ENST00000543140 IL20RBQ6UXL0 311 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 POMGNT2Q8NAT1 580 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 ZNF511Q8NB15 262 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 LSM14AQ8ND56 463 aaKnown RBP14.86□□□□□ -0.03
COL4A1-204ENST00000543140 LRFN5Q96NI6 719 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 NOX1Q9Y5S8 564 aa14.86□□□□□ -0.03
COL4A1-204ENST00000543140 CACNA1CQ13936 2221 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 CD14P08571 375 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ASAH2BP0C7U1 165 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 GAAP10253 952 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 IMPDH2P12268 514 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 CXCR1P25024 350 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 PSMB10P40306 273 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 MTNR1BP49286 362 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 TAS2R43P59537 309 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 SCN1BQ07699 218 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 LCN1P1Q5VSP4 162 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 JAZF1Q86VZ6 243 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 GALNT6Q8NCL4 622 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 NMNAT2Q9BZQ4 307 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ADAM19Q9H013 955 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 SRA1Q9HD15 236 aaKnown RBP14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ACOXLQ9NUZ1 547 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ST6GALNAC2Q9UJ37 374 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 DMDP11532 3685 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 TPTEP56180 551 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 GGTLC2Q14390 218 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ACSM3Q53FZ2 586 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 OR5M10Q6IEU7 315 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 FAM122BQ7Z309 247 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 NANOGNBQ7Z5D8 188 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 DTX3Q8N9I9 347 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 LRRC75AQ8NAA5 344 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 OR2I1PQ8NGU4 316 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 GPX7Q96SL4 187 aaPredicted RBP14.85□□□□□ -0.03
COL4A1-204ENST00000543140 ALG12Q9BV10 488 aa14.85□□□□□ -0.03
COL4A1-204ENST00000543140 LY6G6EA0A0G2JKS1 128 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 ALG1L2C9J202 215 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 CPNE3O75131 537 aaKnown RBP14.84□□□□□ -0.03
COL4A1-204ENST00000543140 NRG3P56975 720 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 IL18Q14116 193 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 ZNF800Q2TB10 664 aaPredicted RBP eCLIP14.84□□□□□ -0.03
COL4A1-204ENST00000543140 HLA-BQ31612 363 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 RHBDD2Q6NTF9 364 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 PWWP2BQ6NUJ5 590 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 GDPD1Q8N9F7 314 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 PIGKQ92643 395 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 GUCD1Q96NT3 240 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 CCNL2Q96S94 520 aaPredicted RBP14.84□□□□□ -0.03
COL4A1-204ENST00000543140 NCDNQ9UBB6 729 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 U3KQA8 63 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 C2orf72A6NCS6 295 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 FAM25AB3EWG3 89 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 FAM25CB3EWG5 89 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 FAM25GB3EWG6 89 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 IDSB3KWA1 339 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 DCTN6O00399 190 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 TO15178 435 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 IDH3BO43837 385 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 HIST1H2ABP04908 130 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 UQCRC1P31930 480 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 SLC6A8P48029 635 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 EVX1P49640 407 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 NR0B2Q15466 257 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 YOD1Q5VVQ6 348 aaPredicted RBP14.84□□□□□ -0.03
COL4A1-204ENST00000543140 MZT2AQ6P582 158 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 HIST3H2AQ7L7L0 130 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 SYT9Q86SS6 491 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 PLPP5Q8NEB5 264 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 MAFAQ8NHW3 353 aaPredicted RBP14.84□□□□□ -0.03
COL4A1-204ENST00000543140 SETD6Q8TBK2 473 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 DUSP19Q8WTR2 217 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 OIT3Q8WWZ8 545 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 THAP4Q8WY91 577 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 HIST1H2ACQ93077 130 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 SLC25A36Q96CQ1 311 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 GRHPRQ9UBQ7 328 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 SRPK3Q9UPE1 567 aa14.84□□□□□ -0.03
COL4A1-204ENST00000543140 C11orf98E9PRG8 122 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 CDC40O60508 579 aaKnown RBP eCLIP14.83□□□□□ -0.04
COL4A1-204ENST00000543140 MYL9P24844 172 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 EVI2BP34910 448 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 GDI2P50395 445 aaKnown RBP14.83□□□□□ -0.04
COL4A1-204ENST00000543140 GBX2P52951 348 aaPredicted RBP14.83□□□□□ -0.04
COL4A1-204ENST00000543140 ACTA2P62736 377 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 ACTG2P63267 376 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 RNF4P78317 190 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 SIRPAP78324 504 aa14.83□□□□□ -0.04
COL4A1-204ENST00000543140 NKAIN1Q4KMZ8 207 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 54.7 ms