RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 C5orf58C9J3I9 102 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 AP3D1O14617 1153 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 KLF11O14901 512 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 AKAP8O43823 692 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 ZNF500O60304 480 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 PDE5AO76074 875 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 AKR7A3O95154 331 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 AHSA1O95433 338 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TGDSO95455 350 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ITGA5P08648 1049 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 KITP10721 976 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 PNMTP11086 282 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 IMPDH2P12268 514 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ETS2P15036 469 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ZNF43P17038 809 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 SNRPD2P62316 118 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 MPP2Q14168 576 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 MFSD13AQ14CX5 517 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 OR7A5Q15622 319 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ZNF311Q5JNZ3 666 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 COX20Q5RI15 118 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 C6orf10Q5SRN2 563 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TSPO2Q5TGU0 170 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 C1orf140Q5VVS0 124 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 C11orf71Q6IPW1 123 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 HMBOX1Q6NT76 420 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ANKRD16Q6P6B7 361 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 UGT2A3Q6UWM9 527 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 CREB3L2Q70SY1 520 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 CXXC5Q7LFL8 322 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 OLIG3Q7RTU3 272 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ZC3HAV1Q7Z2W4 902 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 SNX32Q86XE0 403 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 GOLGA6L1Q8N7Z2 621 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TMEM99Q8N816 258 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 WDR31Q8NA23 367 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 OR4F15Q8NGB8 312 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 OR52E4Q8NGH9 312 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 BBS10Q8TAM1 723 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 PNPT1Q8TCS8 783 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 MAGEE2Q8TD90 523 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 DNAJA4Q8WW22 397 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 AURKBQ96GD4 344 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 MAELQ96JY0 434 aaKnown RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 TEX37Q96LM6 180 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 OCSTAMPQ9BR26 566 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 KATNB1Q9BVA0 655 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 LINC00470Q9BZP3 86 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 WDR55Q9H6Y2 383 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 BCL2L10Q9HD36 194 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 RLIMQ9NVW2 624 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 TMEM160Q9NX00 188 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 ADPRHL2Q9NX46 363 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 SELENONQ9NZV5 590 aa6.2□□□□□ -1.42
VPS41-208ENST00000448833 GDF2Q9UK05 429 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 ZNF443Q9Y2A4 671 aaPredicted RBP6.2□□□□□ -1.42
VPS41-208ENST00000448833 MXRA5Q9NR99 2828 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ARPC4-TTLL3A0A0A6YYG9 625 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 LOC102725191A0A1B0GVB3 256 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 LOC390937A0A1W2PQ73 354 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 PRORSD1PA6NEY8 169 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 KIAA1324LA8MWY0 1029 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 EVPLLA8MZ36 301 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 B9A039 149 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 CLIC1O00299 241 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ENTPD5O75356 428 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 BCAS1O75363 584 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 SERPINB7O75635 380 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 BCHEP06276 602 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 GKN3PP0CG01 181 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 FAM157CP0CG43 387 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 BMP2P12643 396 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ETFAP13804 333 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 CDH2P19022 906 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 USF1P22415 310 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 EDNRAP25101 427 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 IL12AP29459 219 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 NTF4P34130 210 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 THBS2P35442 1172 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 SERPINF1P36955 418 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ACAA2P42765 397 aaKnown RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 CDKN2CP42773 168 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 GZMKP49863 264 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 PDLIM4P50479 330 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 WDR4P57081 412 aaKnown RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 VLDLRP98155 873 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 C1DQ13901 141 aaKnown RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 RGNQ15493 299 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 FAM91A1Q658Y4 838 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 CYB5R2Q6BCY4 276 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 HMGN2P46Q86SG4 172 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ATG4DQ86TL0 474 aaPredicted RBP6.19□□□□□ -1.42
VPS41-208ENST00000448833 VRK2Q86Y07 508 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 LSMEM1Q8N8F7 131 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ZIC4Q8N9L1 334 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 PIK3C3Q8NEB9 887 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 TMEM158Q8WZ71 300 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 SLC38A4Q969I6 547 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 ANKRD27Q96NW4 1050 aa6.19□□□□□ -1.42
VPS41-208ENST00000448833 OXGR1Q96P68 337 aa6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 126.9 ms