RNA–Protein interactions for RNA: YDR139C

RUB1, Transcript of Ubiquitin-like protein with similarity to mammalian NEDD8, yeast

Gene RUB1, Length 234 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RUB1	YDR139C	HXT16	P47185	567 aa		4.86	□□□□□ -1.63
RUB1	YDR139C	UTP14	Q04500	899 aa	Known RBP	4.86	□□□□□ -1.63
RUB1	YDR139C	ENB1	Q08299	606 aa		4.86	□□□□□ -1.63
RUB1	YDR139C	SWM1	Q12379	170 aa		4.86	□□□□□ -1.63
RUB1	YDR139C	SRD1	P09007	221 aa		4.85	□□□□□ -1.63
RUB1	YDR139C	CAD1	P24813	409 aa	Known RBP	4.85	□□□□□ -1.63
RUB1	YDR139C	KAR4	P25583	335 aa		4.85	□□□□□ -1.63
RUB1	YDR139C	SEC21	P32074	935 aa	Known RBP	4.85	□□□□□ -1.63
RUB1	YDR139C	DCG1	P32460	244 aa		4.85	□□□□□ -1.63
RUB1	YDR139C	MCD4	P36051	919 aa		4.85	□□□□□ -1.63
RUB1	YDR139C	RPN10	P38886	268 aa	Known RBP	4.85	□□□□□ -1.63
RUB1	YDR139C	THI21	Q08975	551 aa		4.85	□□□□□ -1.63
RUB1	YDR139C	HCM1	P25364	564 aa		4.84	□□□□□ -1.63
RUB1	YDR139C	FPR3	P38911	411 aa	Known RBP	4.84	□□□□□ -1.63
RUB1	YDR139C	PZF1	P39933	429 aa		4.84	□□□□□ -1.63
RUB1	YDR139C	SSY5	P47002	699 aa		4.84	□□□□□ -1.63
RUB1	YDR139C	SNP1	Q00916	300 aa	Predicted RBP	4.84	□□□□□ -1.63
RUB1	YDR139C	PEX19	Q07418	342 aa		4.84	□□□□□ -1.63
RUB1	YDR139C	NOP14	Q99207	810 aa	Known RBP	4.84	□□□□□ -1.63
RUB1	YDR139C	PFK1	P16861	987 aa	Known RBP	4.83	□□□□□ -1.64
RUB1	YDR139C	YEL1	P34225	687 aa		4.83	□□□□□ -1.64
RUB1	YDR139C	ZIP2	P53061	704 aa		4.83	□□□□□ -1.64
RUB1	YDR139C	TFB2	Q02939	513 aa		4.83	□□□□□ -1.64
RUB1	YDR139C	CRR1	Q05790	422 aa		4.83	□□□□□ -1.64
RUB1	YDR139C	PMA1	P05030	918 aa	Known RBP	4.82	□□□□□ -1.64
RUB1	YDR139C	RAD18	P10862	487 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	SFP1	P32432	683 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	NGG1	P32494	702 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	MSS4	P38994	779 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	ASI2	P53895	289 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	SLU7	Q02775	382 aa	Known RBP	4.82	□□□□□ -1.64
RUB1	YDR139C	COG8	Q04632	607 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	YDR338C	Q05497	695 aa		4.82	□□□□□ -1.64
RUB1	YDR139C	TUB3	P09734	445 aa	Known RBP	4.81	□□□□□ -1.64
RUB1	YDR139C	HOG1	P32485	435 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	SAK1	P38990	1142 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	VHR1	P40522	640 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	YFL052W	P43551	465 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	DOS2	P54858	310 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	PKH1	Q03407	766 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	MUS81	Q04149	632 aa	Predicted RBP	4.81	□□□□□ -1.64
RUB1	YDR139C	URN1	Q06525	465 aa	Known RBP	4.81	□□□□□ -1.64
RUB1	YDR139C	NTO1	Q12311	748 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	TRM11	Q12463	433 aa		4.81	□□□□□ -1.64
RUB1	YDR139C	BRN1	P38170	754 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	PHO23	P50947	330 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	NPY1	P53164	384 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	YNL193W	P53870	558 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	NHX1	Q04121	633 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	LAS17	Q12446	633 aa		4.8	□□□□□ -1.64
RUB1	YDR139C	RPL8A	P17076	256 aa	Known RBP	4.79	□□□□□ -1.64
RUB1	YDR139C	PCL2	P25693	308 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	TRM2	P33753	639 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	CTF13	P35203	478 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	HSL7	P38274	827 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	PFA3	P42836	336 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	BNA2	P47125	453 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	MTR3	P48240	250 aa	Predicted RBP	4.79	□□□□□ -1.64
RUB1	YDR139C	YLR001C	Q07895	862 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	YGR161W-C	Q3E744	92 aa		4.79	□□□□□ -1.64
RUB1	YDR139C	YLR415C	O13578	112 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	TRP4	P07285	380 aa	Predicted RBP	4.78	□□□□□ -1.64
RUB1	YDR139C	PRP4	P20053	465 aa	Known RBP	4.78	□□□□□ -1.64
RUB1	YDR139C	SFL1	P20134	766 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	PMI40	P29952	429 aa	Known RBP	4.78	□□□□□ -1.64
RUB1	YDR139C	SPC42	P36094	363 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	RPP1	P38786	293 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	DOT6	P40059	670 aa	Known RBP	4.78	□□□□□ -1.64
RUB1	YDR139C	DNM1	P54861	757 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	AIM39	Q08223	395 aa		4.78	□□□□□ -1.64
RUB1	YDR139C	ADR1	P07248	1323 aa		4.77	□□□□□ -1.65
RUB1	YDR139C	HRR25	P29295	494 aa	Known RBP	4.77	□□□□□ -1.65
RUB1	YDR139C	DEF1	P35732	738 aa	Known RBP	4.77	□□□□□ -1.65
RUB1	YDR139C	ATG33	Q06485	197 aa		4.77	□□□□□ -1.65
RUB1	YDR139C	GPR1	Q12361	961 aa		4.77	□□□□□ -1.65
RUB1	YDR139C	YLR149C	Q99296	730 aa		4.77	□□□□□ -1.65
RUB1	YDR139C	TUB2	P02557	457 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	MIH1	P23748	554 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	EFT1	P32324	842 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	PCM1	P38628	557 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	SIC1	P38634	284 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	YJR142W	P47173	342 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	BUL1	P48524	976 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	SDA1	P53313	767 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	ERG5	P54781	538 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	GIS1	Q03833	894 aa		4.76	□□□□□ -1.65
RUB1	YDR139C	GSF2	Q04697	403 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	RPN7	Q06103	429 aa	Known RBP	4.76	□□□□□ -1.65
RUB1	YDR139C	MET3	P08536	511 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	HMG1	P12683	1054 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	YKR051W	P36142	418 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	KTR4	P38131	464 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	FKH2	P41813	862 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	HLJ1	P48353	224 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	AIM14	P53109	570 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	YBP2	P53169	641 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	NRG1	Q03125	231 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	ASM4	Q05166	528 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	GIN4	Q12263	1142 aa		4.75	□□□□□ -1.65
RUB1	YDR139C	Q0142	Q9ZZW4	58 aa		4.75	□□□□□ -1.65

Retrieved 100 of 5,963 RNA–protein pairs in 87.8 ms