RNA–Protein interactions for RNA: YAL013W

DEP1, Transcript of Component of the Rpd3L histone deacetylase complex, yeastyeast

Gene DEP1, Length 1,218 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
DEP1YAL013W SWI3P32591 825 aa15.16■□□□□ 0.02
DEP1YAL013W TRZ1P36159 838 aaPredicted RBP15.16■□□□□ 0.02
DEP1YAL013W MMS4P38257 691 aa15.16■□□□□ 0.02
DEP1YAL013W SCD6P45978 349 aaKnown RBP RIP-Chip data15.16■□□□□ 0.02not detected
DEP1YAL013W SOV1Q04748 898 aa15.16■□□□□ 0.02
DEP1YAL013W SML1Q04964 104 aa15.16■□□□□ 0.02
DEP1YAL013W MCM16Q12262 181 aa15.16■□□□□ 0.02
DEP1YAL013W PET111P08468 800 aa15.15■□□□□ 0.02
DEP1YAL013W IME1P21190 360 aa15.15■□□□□ 0.02
DEP1YAL013W JNM1P36224 373 aa15.15■□□□□ 0.02
DEP1YAL013W NGL3Q03210 505 aa15.15■□□□□ 0.02
DEP1YAL013W YML082WQ04533 649 aaKnown RBP15.15■□□□□ 0.02
DEP1YAL013W VAC14Q06708 880 aa15.15■□□□□ 0.02
DEP1YAL013W IWR1Q07532 353 aaPredicted RBP15.15■□□□□ 0.02
DEP1YAL013W ZPS1Q12512 249 aa15.15■□□□□ 0.02
DEP1YAL013W STE11P23561 717 aa15.14■□□□□ 0.01
DEP1YAL013W SKG6P32900 734 aaPredicted RBP15.14■□□□□ 0.01
DEP1YAL013W DUR3P33413 735 aa15.14■□□□□ 0.01
DEP1YAL013W TCD1P38756 429 aa15.14■□□□□ 0.01
DEP1YAL013W CEP3P40969 608 aa15.14■□□□□ 0.01
DEP1YAL013W CPR7P47103 393 aa15.14■□□□□ 0.01
DEP1YAL013W HOS3Q02959 697 aaKnown RBP15.14■□□□□ 0.01
DEP1YAL013W RGA2Q06407 1009 aa15.14■□□□□ 0.01
DEP1YAL013W KIC1P38692 1080 aa15.13■□□□□ 0.01
DEP1YAL013W CLA4P48562 842 aa15.13■□□□□ 0.01
DEP1YAL013W YGR021WP53212 290 aa15.13■□□□□ 0.01
DEP1YAL013W SNF1P06782 633 aaKnown RBP15.12■□□□□ 0.01
DEP1YAL013W GLN3P18494 730 aa15.12■□□□□ 0.01
DEP1YAL013W CKI1P20485 582 aa15.12■□□□□ 0.01
DEP1YAL013W YMR124WP39523 943 aaKnown RBP15.12■□□□□ 0.01
DEP1YAL013W TBF1Q02457 562 aa15.12■□□□□ 0.01
DEP1YAL013W SYH1Q02875 849 aaKnown RBP15.12■□□□□ 0.01
DEP1YAL013W SHS1Q07657 551 aa15.12■□□□□ 0.01
DEP1YAL013W YLR001CQ07895 862 aa15.12■□□□□ 0.01
DEP1YAL013W SGT2Q12118 346 aaKnown RBP15.12■□□□□ 0.01
DEP1YAL013W ERG11P10614 530 aa15.11■□□□□ 0.01
DEP1YAL013W ADE2P21264 571 aaKnown RBP15.11■□□□□ 0.01
DEP1YAL013W SRB4P32569 687 aa15.11■□□□□ 0.01
DEP1YAL013W RPT1P33299 467 aaKnown RBP15.11■□□□□ 0.01
DEP1YAL013W CSG2P35206 410 aa15.11■□□□□ 0.01
DEP1YAL013W YAP1801P38856 637 aa15.11■□□□□ 0.01
DEP1YAL013W BUD16P39988 312 aa15.11■□□□□ 0.01
DEP1YAL013W ULI1P43604 169 aa15.11■□□□□ 0.01
DEP1YAL013W TPO2P53283 614 aa15.11■□□□□ 0.01
DEP1YAL013W BTN2P53286 410 aa15.11■□□□□ 0.01
DEP1YAL013W DOT1Q04089 582 aaKnown RBP15.11■□□□□ 0.01
DEP1YAL013W CDC33P07260 213 aaKnown RBP15.1■□□□□ 0.01
DEP1YAL013W ASP3-2P0CX77 362 aa15.1■□□□□ 0.01
DEP1YAL013W ASP3-3P0CX78 362 aa15.1■□□□□ 0.01
DEP1YAL013W ASP3-4P0CX79 362 aa15.1■□□□□ 0.01
DEP1YAL013W ASP3-1P0CZ17 362 aa15.1■□□□□ 0.01
DEP1YAL013W COX11P19516 300 aaKnown RBP15.1■□□□□ 0.01
DEP1YAL013W SEC21P32074 935 aaKnown RBP15.1■□□□□ 0.01
DEP1YAL013W AZR1P50080 613 aa15.1■□□□□ 0.01
DEP1YAL013W VPS62P53285 467 aa15.1■□□□□ 0.01
DEP1YAL013W MUK1Q02866 612 aa15.1■□□□□ 0.01
DEP1YAL013W AI5_BETAQ9ZZX0 354 aa15.1■□□□□ 0.01
DEP1YAL013W RPL4AP10664 362 aaKnown RBP15.09■□□□□ 0.01
DEP1YAL013W DAL2P25335 343 aa15.09■□□□□ 0.01
DEP1YAL013W PTC4P38089 393 aa15.09■□□□□ 0.01
DEP1YAL013W EXO5P38289 585 aa15.09■□□□□ 0.01
DEP1YAL013W NDC80P40460 691 aa15.09■□□□□ 0.01
DEP1YAL013W RPL4BP49626 362 aaKnown RBP15.09■□□□□ 0.01
DEP1YAL013W VPS60Q03390 229 aa15.09■□□□□ 0.01
DEP1YAL013W PAH1P32567 862 aa15.08■□□□□ 0
DEP1YAL013W ALD5P40047 520 aaKnown RBP15.08■□□□□ 0
DEP1YAL013W ISM1P48526 1002 aa15.08■□□□□ 0
DEP1YAL013W VPS72Q03388 795 aa15.08■□□□□ 0
DEP1YAL013W RPS3P05750 240 aaKnown RBP15.07■□□□□ 0
DEP1YAL013W RNR1P21524 888 aaKnown RBP15.07■□□□□ 0
DEP1YAL013W DPB3P27344 201 aa15.07■□□□□ 0
DEP1YAL013W TRM2P33753 639 aa15.07■□□□□ 0
DEP1YAL013W BCH2P36122 765 aa15.07■□□□□ 0
DEP1YAL013W TVP23P38962 199 aa15.07■□□□□ 0
DEP1YAL013W PHO86P46956 311 aa15.07■□□□□ 0
DEP1YAL013W STE20Q03497 939 aaKnown RBP15.07■□□□□ 0
DEP1YAL013W MAM3Q12296 706 aa15.07■□□□□ 0
DEP1YAL013W SPT2P06843 333 aaPredicted RBP15.06■□□□□ 0
DEP1YAL013W YKL050CP35736 922 aa15.06■□□□□ 0
DEP1YAL013W UIP5P36137 443 aa15.06■□□□□ 0
DEP1YAL013W ZAP1P47043 880 aa15.06■□□□□ 0
DEP1YAL013W MAL13P53338 473 aa15.06■□□□□ 0
DEP1YAL013W ABP140Q08641 628 aaKnown RBP15.06■□□□□ 0
DEP1YAL013W ECM3Q99252 613 aa15.06■□□□□ 0
DEP1YAL013W RRT12P25381 491 aa15.05■□□□□ -0
DEP1YAL013W PRR1P28708 518 aa15.05■□□□□ -0
DEP1YAL013W YEL043WP32618 956 aa15.05■□□□□ -0
DEP1YAL013W UBX7P38349 436 aa15.05■□□□□ -0
DEP1YAL013W DYS1P38791 387 aa15.05■□□□□ -0
DEP1YAL013W YER186CP40101 306 aa15.05■□□□□ -0
DEP1YAL013W YTA12P40341 825 aa15.05■□□□□ -0
DEP1YAL013W PUS2P53167 370 aa15.05■□□□□ -0
DEP1YAL013W POB3Q04636 552 aaKnown RBP15.05■□□□□ -0
DEP1YAL013W PCD1Q12524 340 aa15.05■□□□□ -0
DEP1YAL013W HEM1P09950 548 aaPredicted RBP15.04■□□□□ -0
DEP1YAL013W BLI1P35727 113 aa15.04■□□□□ -0
DEP1YAL013W YHR054CP38780 354 aa15.04■□□□□ -0
DEP1YAL013W SMF1P38925 575 aa15.04■□□□□ -0
DEP1YAL013W SAH1P39954 449 aaKnown RBP15.04■□□□□ -0
DEP1YAL013W RRD1P40454 393 aaKnown RBP15.04■□□□□ -0
Retrieved 100 of 5,963 RNA–protein pairs in 78.8 ms