RNA–Protein interactions for RNA: ENST00000640289.1

GTF3A-209, Transcript of general transcription factor IIIA, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene GTF3A, Length 1,098 nt, Biotype protein coding, Subcellular localisation Cytosol, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3A-209ENST00000640289 TTLL6Q8N841 843 aa16.63■□□□□ 0.25
GTF3A-209ENST00000640289 TTLL11Q8NHH1 800 aa16.63■□□□□ 0.25
GTF3A-209ENST00000640289 RBM17Q96I25 401 aaKnown RBP16.63■□□□□ 0.25
GTF3A-209ENST00000640289 KAZALD1Q96I82 304 aa16.63■□□□□ 0.25
GTF3A-209ENST00000640289 LAMB2P55268 1798 aa16.62■□□□□ 0.25
GTF3A-209ENST00000640289 DALRD3Q5D0E6 543 aaKnown RBP16.62■□□□□ 0.25
GTF3A-209ENST00000640289 SLC51AQ86UW1 340 aa16.62■□□□□ 0.25
GTF3A-209ENST00000640289 CNKSR1Q969H4 720 aa16.62■□□□□ 0.25
GTF3A-209ENST00000640289 SEC31BQ9NQW1 1179 aa16.62■□□□□ 0.25
GTF3A-209ENST00000640289 ZNF219Q9P2Y4 722 aaPredicted RBP16.62■□□□□ 0.25
GTF3A-209ENST00000640289 UBTFL1P0CB47 393 aaPredicted RBP16.61■□□□□ 0.25
GTF3A-209ENST00000640289 MS4A1P11836 297 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 GPR162Q16538 588 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 CCDC152Q4G0S7 254 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 PRPF40BQ6NWY9 871 aaKnown RBP16.61■□□□□ 0.25
GTF3A-209ENST00000640289 DDX46Q7L014 1031 aaKnown RBP16.61■□□□□ 0.25
GTF3A-209ENST00000640289 CRAMP1Q96RY5 1269 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 BICC1Q9H694 974 aaKnown RBP16.61■□□□□ 0.25
GTF3A-209ENST00000640289 GREM2Q9H772 168 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 COG6Q9Y2V7 657 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 DLEC1Q9Y238 1755 aa16.61■□□□□ 0.25
GTF3A-209ENST00000640289 COL4A1P02462 1669 aa16.6■□□□□ 0.25
GTF3A-209ENST00000640289 CSF1RP07333 972 aa16.6■□□□□ 0.25
GTF3A-209ENST00000640289 ALDH1B1P30837 517 aa16.6■□□□□ 0.25
GTF3A-209ENST00000640289 FAM161AQ3B820 660 aa16.6■□□□□ 0.25
GTF3A-209ENST00000640289 LMBR1LQ6UX01 489 aa16.6■□□□□ 0.25
GTF3A-209ENST00000640289 CELF1Q92879 486 aaKnown RBP16.6■□□□□ 0.25
GTF3A-209ENST00000640289 GRAPQ13588 217 aa16.59■□□□□ 0.25
GTF3A-209ENST00000640289 PDE3AQ14432 1141 aa16.59■□□□□ 0.25
GTF3A-209ENST00000640289 MVPQ14764 893 aaKnown RBP16.59■□□□□ 0.25
GTF3A-209ENST00000640289 OLFM4Q6UX06 510 aa16.59■□□□□ 0.25
GTF3A-209ENST00000640289 ANKRD44Q8N8A2 993 aa16.59■□□□□ 0.25
GTF3A-209ENST00000640289 GRAPLQ8TC17 118 aaPredicted RBP16.59■□□□□ 0.25
GTF3A-209ENST00000640289 CHMP3Q9Y3E7 222 aa16.59■□□□□ 0.25
GTF3A-209ENST00000640289 LRRFIP2Q9Y608 721 aaKnown RBP16.59■□□□□ 0.25
GTF3A-209ENST00000640289 ZBTB7BO15156 539 aaPredicted RBP16.58■□□□□ 0.24
GTF3A-209ENST00000640289 C21orf2O43822 256 aa16.58■□□□□ 0.24
GTF3A-209ENST00000640289 GNAI3P08754 354 aa16.58■□□□□ 0.24
GTF3A-209ENST00000640289 SUPT16HQ9Y5B9 1047 aaKnown RBP16.58■□□□□ 0.24
GTF3A-209ENST00000640289 BRCA1P38398 1863 aaKnown RBP16.58■□□□□ 0.24
GTF3A-209ENST00000640289 PPEF1O14829 653 aaPredicted RBP16.57■□□□□ 0.24
GTF3A-209ENST00000640289 ITGA6P23229 1130 aa16.57■□□□□ 0.24
GTF3A-209ENST00000640289 RABL6Q3YEC7 729 aaPredicted RBP16.57■□□□□ 0.24
GTF3A-209ENST00000640289 C7orf43Q8WVR3 580 aa16.57■□□□□ 0.24
GTF3A-209ENST00000640289 RTL9Q8NET4 1388 aa16.56■□□□□ 0.24
GTF3A-209ENST00000640289 C1orf115Q9H7X2 142 aa16.56■□□□□ 0.24
GTF3A-209ENST00000640289 SLX4Q8IY92 1834 aa16.56■□□□□ 0.24
GTF3A-209ENST00000640289 BBOX1O75936 387 aa16.55■□□□□ 0.24
GTF3A-209ENST00000640289 RPS8P62241 208 aaKnown RBP16.55■□□□□ 0.24
GTF3A-209ENST00000640289 DDX19BQ9UMR2 479 aa16.55■□□□□ 0.24
GTF3A-209ENST00000640289 ANKRD18BA2A2Z9 1011 aa16.54■□□□□ 0.24
GTF3A-209ENST00000640289 GNAI2P04899 355 aa16.54■□□□□ 0.24
GTF3A-209ENST00000640289 IFIT5Q13325 482 aaKnown RBP16.54■□□□□ 0.24
GTF3A-209ENST00000640289 ANKRD18AQ8IVF6 992 aa16.54■□□□□ 0.24
GTF3A-209ENST00000640289 ZNF594Q96JF6 807 aaPredicted RBP16.54■□□□□ 0.24
GTF3A-209ENST00000640289 CDC5LQ99459 802 aaKnown RBP16.54■□□□□ 0.24
GTF3A-209ENST00000640289 TAF1P21675 1872 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 DCAF8L1A6NGE4 600 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 CCDC57Q2TAC2 916 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 ARHGAP27Q6ZUM4 889 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 HDAC5Q9UQL6 1122 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 ATP6V0A2Q9Y487 856 aa16.53■□□□□ 0.24
GTF3A-209ENST00000640289 CACNA1SQ13698 1873 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 GRIN3BO60391 1043 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 IGHMBP2P38935 993 aaKnown RBP16.52■□□□□ 0.24
GTF3A-209ENST00000640289 RASSF7Q02833 373 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 CCDC93Q567U6 631 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 SP8Q8IXZ3 490 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 KLHDC4Q8TBB5 520 aa16.52■□□□□ 0.24
GTF3A-209ENST00000640289 MYH3P11055 1940 aa16.52■□□□□ 0.23
GTF3A-209ENST00000640289 NFKBIEO00221 500 aa16.51■□□□□ 0.23
GTF3A-209ENST00000640289 RFX5P48382 616 aaPredicted RBP16.51■□□□□ 0.23
GTF3A-209ENST00000640289 CRBNQ96SW2 442 aa16.51■□□□□ 0.23
GTF3A-209ENST00000640289 ZBTB40Q9NUA8 1239 aa16.51■□□□□ 0.23
GTF3A-209ENST00000640289 SNED1Q8TER0 1413 aa16.51■□□□□ 0.23
GTF3A-209ENST00000640289 ARFGEF1Q9Y6D6 1849 aa16.5■□□□□ 0.23
GTF3A-209ENST00000640289 TAF7LQ5H9L4 462 aa16.5■□□□□ 0.23
GTF3A-209ENST00000640289 SOGA3Q5TF21 947 aa16.5■□□□□ 0.23
GTF3A-209ENST00000640289 TMC4Q7Z404 712 aa16.5■□□□□ 0.23
GTF3A-209ENST00000640289 MPHOSPH8Q99549 860 aa16.5■□□□□ 0.23
GTF3A-209ENST00000640289 PUS3Q9BZE2 481 aaKnown RBP16.5■□□□□ 0.23
GTF3A-209ENST00000640289 BSDC1Q9NW68 430 aaPredicted RBP16.5■□□□□ 0.23
GTF3A-209ENST00000640289 PNMA6EA0A0J9YXQ4 647 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 SRGAP3O43295 1099 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 GPSM2P81274 684 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 MTX1Q13505 466 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 CC2D2BQ6DHV5 1058 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 MINPP1Q9UNW1 487 aa16.49■□□□□ 0.23
GTF3A-209ENST00000640289 PRELPP51888 382 aa16.48■□□□□ 0.23
GTF3A-209ENST00000640289 IRX6P78412 446 aaPredicted RBP16.48■□□□□ 0.23
GTF3A-209ENST00000640289 PTPN12Q05209 780 aaKnown RBP16.48■□□□□ 0.23
GTF3A-209ENST00000640289 LDHAL6AQ6ZMR3 332 aa16.48■□□□□ 0.23
GTF3A-209ENST00000640289 RTKN2Q8IZC4 609 aa16.48■□□□□ 0.23
GTF3A-209ENST00000640289 TMX4Q9H1E5 349 aaPredicted RBP16.48■□□□□ 0.23
GTF3A-209ENST00000640289 NSFL1CQ9UNZ2 370 aaKnown RBP16.48■□□□□ 0.23
GTF3A-209ENST00000640289 PA2G4Q9UQ80 394 aaKnown RBP16.48■□□□□ 0.23
GTF3A-209ENST00000640289 ATP8B2P98198 1209 aa16.47■□□□□ 0.23
GTF3A-209ENST00000640289 FKBP4Q02790 459 aaKnown RBP eCLIP16.47■□□□□ 0.23
GTF3A-209ENST00000640289 LRRC24Q50LG9 513 aa16.47■□□□□ 0.23
GTF3A-209ENST00000640289 CEP85Q6P2H3 762 aa16.47■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms