RNA–Protein interactions for RNA: ENST00000621217.4

GGA3-222, Transcript of golgi associated, gamma adaptin ear containing, ARF binding protein 3, humanhuman

TSL 2

Gene GGA3, Length 4,181 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GGA3-222ENST00000621217 KIF2CQ99661 725 aa10.7□□□□□ -0.7
GGA3-222ENST00000621217 METTL22Q9BUU2 404 aaPredicted RBP10.69□□□□□ -0.7
GGA3-222ENST00000621217 RBSNQ9H1K0 784 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 PRDM10Q9NQV6 1147 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 CWC15Q9P013 229 aaKnown RBP10.69□□□□□ -0.7
GGA3-222ENST00000621217 ZHX1Q9UKY1 873 aaPredicted RBP10.69□□□□□ -0.7
GGA3-222ENST00000621217 BEND3Q5T5X7 828 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 SMIM5Q71RC9 77 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 SDF4Q9BRK5 362 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 TRIM5Q9C035 493 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 SPATA31A3Q5VYP0 1347 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 KIAA1210Q9ULL0 1709 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 PTCH1Q13635 1447 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 CD163L1Q9NR16 1453 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 MINDY4BA8MYZ0 360 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 DHX16O60231 1041 aaKnown RBP10.69□□□□□ -0.7
GGA3-222ENST00000621217 PTH1RQ03431 593 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 SYNE3Q6ZMZ3 975 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 RASEFQ8IZ41 740 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 KIF3AQ9Y496 699 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 SNX14Q9Y5W7 946 aa10.69□□□□□ -0.7
GGA3-222ENST00000621217 TPM3P06753 285 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 ARGLU1Q9NWB6 273 aaPredicted RBP10.68□□□□□ -0.7
GGA3-222ENST00000621217 NEURL1BA8MQ27 555 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 IRS4O14654 1257 aaPredicted RBP10.68□□□□□ -0.7
GGA3-222ENST00000621217 BRF1Q92994 677 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 TNMDQ9H2S6 317 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 PDCP20941 246 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 SYT1P21579 422 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 ME1P48163 572 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 LMBRD1Q9NUN5 540 aa10.68□□□□□ -0.7
GGA3-222ENST00000621217 TLR7Q9NYK1 1049 aaKnown RBP10.68□□□□□ -0.7
GGA3-222ENST00000621217 CALRP27797 417 aaKnown RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 CCDC73Q6ZRK6 1079 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 ANKIB1Q9P2G1 1089 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 SGSM2O43147 1006 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 TAF5LO75529 589 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 TDO2P48775 406 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 SSH3Q8TE77 659 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 NUP133Q8WUM0 1156 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 EAF2Q96CJ1 260 aaPredicted RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 TEX13AQ9BXU3 409 aaPredicted RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 TMEM63CQ9P1W3 806 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 RIMS1Q86UR5 1692 aaKnown RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 MAP2P11137 1827 aaKnown RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 SPATA31D1Q6ZQQ2 1576 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 ZSCAN22P10073 491 aaPredicted RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 AKAP17AQ02040 695 aaKnown RBP10.67□□□□□ -0.7
GGA3-222ENST00000621217 CCDC144CPQ8IYA2 1237 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 AIDAQ96BJ3 306 aa10.67□□□□□ -0.7
GGA3-222ENST00000621217 WDR17Q8IZU2 1322 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 CREB3L3Q68CJ9 461 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 SYNE4Q8N205 404 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 PLBD2Q8NHP8 589 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 NSFL1CQ9UNZ2 370 aaKnown RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 NBPF5PQ86XG9 351 aaPredicted RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 RASSF8Q8NHQ8 419 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 SEC62Q99442 399 aaKnown RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 ZNF652Q9Y2D9 606 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 ZBTB1Q9Y2K1 713 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 GNPATO15228 680 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 RFC4P35249 363 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 ATP2B3Q16720 1220 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 ADCK5Q3MIX3 580 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 CPLX2Q6PUV4 134 aaKnown RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 ZSCAN31Q96LW9 406 aaPredicted RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 AK7Q96M32 723 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 NOL10Q9BSC4 688 aaKnown RBP10.66□□□□□ -0.7
GGA3-222ENST00000621217 DDX24Q9GZR7 859 aaKnown RBP eCLIP10.66□□□□□ -0.72e-7■■■■□ 24.6
GGA3-222ENST00000621217 NUP62CLQ9H1M0 184 aa10.66□□□□□ -0.7
GGA3-222ENST00000621217 IBTKQ9P2D0 1353 aaPredicted RBP10.65□□□□□ -0.7
GGA3-222ENST00000621217 ARHGEF28Q8N1W1 1705 aaKnown RBP10.65□□□□□ -0.7
GGA3-222ENST00000621217 ERICH2A1L162 156 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 ANAPC15P60006 121 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 LRSAM1Q6UWE0 723 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 GPT2Q8TD30 523 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 PIGBQ92521 554 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 AKAP2Q9Y2D5 859 aa10.65□□□□□ -0.7
GGA3-222ENST00000621217 C1orf167Q5SNV9 1468 aa10.65□□□□□ -0.71
GGA3-222ENST00000621217 LRRC24Q50LG9 513 aa10.65□□□□□ -0.71
GGA3-222ENST00000621217 PDCL2Q8N4E4 241 aa10.65□□□□□ -0.71
GGA3-222ENST00000621217 OVOS2A0A0J9YW53 1432 aa10.65□□□□□ -0.71
GGA3-222ENST00000621217 OVOS2Q6IE36 1432 aa10.65□□□□□ -0.71
GGA3-222ENST00000621217 HOXB7P09629 217 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 CCDC192P0DO97 292 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 ATP2B2Q01814 1243 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 MAPK8IP2Q13387 824 aaPredicted RBP10.64□□□□□ -0.71
GGA3-222ENST00000621217 ANKRD1Q15327 319 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 NEK1Q96PY6 1258 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 PUS3Q9BZE2 481 aaKnown RBP10.64□□□□□ -0.71
GGA3-222ENST00000621217 USP21Q9UK80 565 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 A0A1B0GUL7 405 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 CBX1P83916 185 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 STK38Q15208 465 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 CARD10Q9BWT7 1032 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 TSPYL1Q9H0U9 437 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 TTC12Q9H892 705 aaPredicted RBP10.64□□□□□ -0.71
GGA3-222ENST00000621217 ANKARQ7Z5J8 1434 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 A0A0D9SFI3 127 aa10.64□□□□□ -0.71
GGA3-222ENST00000621217 KINO60870 393 aaKnown RBP10.64□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms