RNA–Protein interactions for RNA: ENST00000620787.4

PDLIM3-212, Transcript of PDZ and LIM domain 3, humanhuman

TSL 4 BASIC

Gene PDLIM3, Length 2,352 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-212ENST00000620787 STK3Q13188 491 aa23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 ZNF589Q86UQ0 364 aaPredicted RBP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 GTPBP4Q9BZE4 634 aaKnown RBP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 BOLA2Q9H3K6 86 aa23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 SPDYE4A6NLX3 237 aa23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 U2AF2P26368 475 aaKnown RBP eCLIP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 G3BP1Q13283 466 aaKnown RBP eCLIP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 ZNF530Q6P9A1 599 aaPredicted RBP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 C16orf45Q96MC5 204 aaPredicted RBP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 BICC1Q9H694 974 aaKnown RBP23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 HMG20BQ9P0W2 317 aa23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 UTYO14607 1347 aa23.15■■□□□ 1.3
PDLIM3-212ENST00000620787 SMTNL1A8MU46 457 aa23.14■■□□□ 1.3
PDLIM3-212ENST00000620787 MPRIPQ6WCQ1 1025 aa23.14■■□□□ 1.3
PDLIM3-212ENST00000620787 DNAJC25Q9H1X3 360 aa23.14■■□□□ 1.3
PDLIM3-212ENST00000620787 GRM8O00222 908 aa23.14■■□□□ 1.29
PDLIM3-212ENST00000620787 ZNF165P49910 485 aa23.14■■□□□ 1.29
PDLIM3-212ENST00000620787 HEG1Q9ULI3 1381 aa23.14■■□□□ 1.29
PDLIM3-212ENST00000620787 MRC1P22897 1456 aa23.14■■□□□ 1.29
PDLIM3-212ENST00000620787 GIGYF1O75420 1035 aaPredicted RBP23.13■■□□□ 1.29
PDLIM3-212ENST00000620787 RESTQ13127 1097 aa23.13■■□□□ 1.29
PDLIM3-212ENST00000620787 SYCP1Q15431 976 aa23.13■■□□□ 1.29
PDLIM3-212ENST00000620787 C14orf37Q86TY3 774 aa23.13■■□□□ 1.29
PDLIM3-212ENST00000620787 BICD2Q8TD16 824 aa23.13■■□□□ 1.29
PDLIM3-212ENST00000620787 PXDNQ92626 1479 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 JAK2O60674 1132 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 LINS1Q8NG48 757 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 GTF3C6Q969F1 213 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 SIPA1L3O60292 1781 aaPredicted RBP23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 TAF5LO75529 589 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 CACTINQ8WUQ7 758 aaKnown RBP23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 CLIP2Q9UDT6 1046 aa23.12■■□□□ 1.29
PDLIM3-212ENST00000620787 PRAMEF22A3QJZ6 481 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 RNMTO43148 476 aaKnown RBP23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 TNNT1P13805 278 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 CDC25BP30305 580 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 CCDC144BQ3MJ40 725 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 USPL1Q5W0Q7 1092 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 CCDC144CPQ8IYA2 1237 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 KIF13AQ9H1H9 1805 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 PHRF1Q9P1Y6 1649 aaKnown RBP23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 BRF1Q92994 677 aa23.11■■□□□ 1.29
PDLIM3-212ENST00000620787 COL15A1P39059 1388 aa23.1■■□□□ 1.29
PDLIM3-212ENST00000620787 SIL1Q9H173 461 aa23.1■■□□□ 1.29
PDLIM3-212ENST00000620787 NCAPD2Q15021 1401 aa23.1■■□□□ 1.29
PDLIM3-212ENST00000620787 CEBPAP49715 358 aaPredicted RBP23.09■■□□□ 1.29
PDLIM3-212ENST00000620787 OVOS2A0A0G2JMS6 1433 aa23.09■■□□□ 1.29
PDLIM3-212ENST00000620787 CAVIN2O95810 425 aa23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 IQCB1Q15051 598 aa23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 PLEKHO1Q53GL0 409 aaPredicted RBP23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 LRRC59Q96AG4 307 aaKnown RBP23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 FEZ1Q99689 392 aa23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 LAMA4Q16363 1823 aa23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 EDC3Q96F86 508 aaKnown RBP23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 PAXBP1Q9Y5B6 917 aa23.08■■□□□ 1.29
PDLIM3-212ENST00000620787 KRT32Q14532 448 aa23.07■■□□□ 1.28
PDLIM3-212ENST00000620787 KLHDC4Q8TBB5 520 aa23.07■■□□□ 1.28
PDLIM3-212ENST00000620787 KCNA6P17658 529 aa23.07■■□□□ 1.28
PDLIM3-212ENST00000620787 SARM1Q6SZW1 724 aa23.07■■□□□ 1.28
PDLIM3-212ENST00000620787 DDX11Q96FC9 970 aa23.07■■□□□ 1.28
PDLIM3-212ENST00000620787 TPD52L1Q16890 204 aaPredicted RBP23.06■■□□□ 1.28
PDLIM3-212ENST00000620787 NEK1Q96PY6 1258 aa23.06■■□□□ 1.28
PDLIM3-212ENST00000620787 ZSCAN16Q9H4T2 348 aaPredicted RBP23.06■■□□□ 1.28
PDLIM3-212ENST00000620787 IGKV5-2P06315 115 aa23.05■■□□□ 1.28
PDLIM3-212ENST00000620787 Q6ZUG5 572 aa23.05■■□□□ 1.28
PDLIM3-212ENST00000620787 C11orf57Q6ZUT1 292 aaPredicted RBP23.05■■□□□ 1.28
PDLIM3-212ENST00000620787 CTNNA3Q9UI47 895 aa23.05■■□□□ 1.28
PDLIM3-212ENST00000620787 CCDC112Q8NEF3 446 aa23.05■■□□□ 1.28
PDLIM3-212ENST00000620787 H3BQV1 296 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 DDX58O95786 925 aaKnown RBP23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 NAA30Q147X3 362 aaPredicted RBP23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 AMOTQ4VCS5 1084 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 IFFO2Q5TF58 517 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 LRRC8AQ8IWT6 810 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 OGFRQ9NZT2 677 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 CFAP45Q9UL16 551 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 PHF8Q9UPP1 1060 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 ZNF609O15014 1411 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 KIF20AO95235 890 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 ADD1P35611 737 aaKnown RBP23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 AIMP1Q12904 312 aaKnown RBP23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 C1orf141Q5JVX7 400 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 MRFAP1L1Q96HT8 127 aa23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 DDX21Q9NR30 783 aaKnown RBP eCLIP23.04■■□□□ 1.28
PDLIM3-212ENST00000620787 PDIA6Q15084 440 aa23.03■■□□□ 1.28
PDLIM3-212ENST00000620787 RBM6P78332 1123 aaKnown RBP23.03■■□□□ 1.28
PDLIM3-212ENST00000620787 SMARCC2Q8TAQ2 1214 aa23.03■■□□□ 1.28
PDLIM3-212ENST00000620787 C5P01031 1676 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 GOLGA6L19H0YKK7 550 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 HSP90B1P14625 803 aaKnown RBP23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 ATP5JP18859 108 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 SCRN1Q12765 414 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 ARID5BQ14865 1188 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 STX1AQ16623 288 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 CEP135Q66GS9 1140 aa23.02■■□□□ 1.28
PDLIM3-212ENST00000620787 ADAMTS7Q9UKP4 1686 aa23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 EPHA10Q5JZY3 1008 aa23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 CGNQ9P2M7 1197 aaKnown RBP23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 RFX7Q2KHR2 1363 aa23.01■■□□□ 1.27
PDLIM3-212ENST00000620787 USP27XA6NNY8 438 aa23.01■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 64.5 ms