RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 KLRG2A4D1S0 409 aaPredicted RBP12.62□□□□□ -0.39
UPF1-213ENST00000601981 SRGNP10124 158 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 DPEP1P16444 411 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 ALDH1B1P30837 517 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 CRY2Q49AN0 593 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 CCDC152Q4G0S7 254 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 CENPQQ7L2Z9 268 aaPredicted RBP12.62□□□□□ -0.39
UPF1-213ENST00000601981 NLGN2Q8NFZ4 835 aa12.62□□□□□ -0.39
UPF1-213ENST00000601981 RBM17Q96I25 401 aaKnown RBP12.62□□□□□ -0.39
UPF1-213ENST00000601981 CHMP4BQ9H444 224 aaKnown RBP12.62□□□□□ -0.39
UPF1-213ENST00000601981 GNAI3P08754 354 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 UBTFL1P0CB47 393 aaPredicted RBP12.61□□□□□ -0.39
UPF1-213ENST00000601981 CHRNA5P30532 468 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 DDX46Q7L014 1031 aaKnown RBP12.61□□□□□ -0.39
UPF1-213ENST00000601981 ITPRIPQ8IWB1 547 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 TTLL6Q8N841 843 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 PLA2G12BQ9BX93 195 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 TMX4Q9H1E5 349 aaPredicted RBP12.61□□□□□ -0.39
UPF1-213ENST00000601981 DDX19BQ9UMR2 479 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 UTYO14607 1347 aa12.61□□□□□ -0.39
UPF1-213ENST00000601981 CTSWP56202 376 aa12.6□□□□□ -0.39
UPF1-213ENST00000601981 SF3B3Q15393 1217 aaKnown RBP12.6□□□□□ -0.39
UPF1-213ENST00000601981 DALRD3Q5D0E6 543 aaKnown RBP12.6□□□□□ -0.39
UPF1-213ENST00000601981 SYNE4Q8N205 404 aa12.6□□□□□ -0.39
UPF1-213ENST00000601981 HOXA10P31260 410 aaPredicted RBP12.59□□□□□ -0.39
UPF1-213ENST00000601981 GPR162Q16538 588 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 TMEM57Q8N5G2 664 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 JARID2Q92833 1246 aaPredicted RBP12.59□□□□□ -0.39
UPF1-213ENST00000601981 CRAMP1Q96RY5 1269 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 BCS1LQ9Y276 419 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 SLX4Q8IY92 1834 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 SPEF2Q9C093 1822 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 TAF1P21675 1872 aa12.59□□□□□ -0.39
UPF1-213ENST00000601981 GOLGB1Q14789 3259 aaKnown RBP12.59□□□□□ -0.39
UPF1-213ENST00000601981 NBPF7P0C2Y1 421 aaPredicted RBP12.58□□□□□ -0.4
UPF1-213ENST00000601981 CASP7P55210 303 aa12.58□□□□□ -0.4
UPF1-213ENST00000601981 SOGA3Q5TF21 947 aa12.58□□□□□ -0.4
UPF1-213ENST00000601981 TMC4Q7Z404 712 aa12.58□□□□□ -0.4
UPF1-213ENST00000601981 ZNF784Q8NCA9 323 aaPredicted RBP12.58□□□□□ -0.4
UPF1-213ENST00000601981 CDC5LQ99459 802 aaKnown RBP12.58□□□□□ -0.4
UPF1-213ENST00000601981 USP44Q9H0E7 712 aa12.58□□□□□ -0.4
UPF1-213ENST00000601981 CHMP3Q9Y3E7 222 aa12.58□□□□□ -0.4
UPF1-213ENST00000601981 RTL9Q8NET4 1388 aa12.57□□□□□ -0.4
UPF1-213ENST00000601981 GRIN3BO60391 1043 aa12.57□□□□□ -0.4
UPF1-213ENST00000601981 KCNA3P22001 575 aa12.57□□□□□ -0.4
UPF1-213ENST00000601981 GRAPQ13588 217 aa12.57□□□□□ -0.4
UPF1-213ENST00000601981 PRPF40BQ6NWY9 871 aaKnown RBP12.57□□□□□ -0.4
UPF1-213ENST00000601981 TTLL11Q8NHH1 800 aa12.57□□□□□ -0.4
UPF1-213ENST00000601981 GRAPLQ8TC17 118 aaPredicted RBP12.57□□□□□ -0.4
UPF1-213ENST00000601981 BBOX1O75936 387 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 GNAI2P04899 355 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 IFIT5Q13325 482 aaKnown RBP12.56□□□□□ -0.4
UPF1-213ENST00000601981 CCDC57Q2TAC2 916 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 GRIPAP1Q4V328 841 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 TAF7LQ5H9L4 462 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 CC2D2BQ6DHV5 1058 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 C3orf67Q6ZVT6 689 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 ANKRD18AQ8IVF6 992 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 SUCLG2Q96I99 432 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 WWC3Q9ULE0 1092 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 CHD4Q14839 1912 aa12.56□□□□□ -0.4
UPF1-213ENST00000601981 ANKRD18BA2A2Z9 1011 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 PPEF1O14829 653 aaPredicted RBP12.55□□□□□ -0.4
UPF1-213ENST00000601981 CSF1RP07333 972 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 IGHMBP2P38935 993 aaKnown RBP12.55□□□□□ -0.4
UPF1-213ENST00000601981 LMBR1LQ6UX01 489 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 CCDC85AQ96PX6 553 aaPredicted RBP12.55□□□□□ -0.4
UPF1-213ENST00000601981 MEIS3Q99687 375 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 BICC1Q9H694 974 aaKnown RBP12.55□□□□□ -0.4
UPF1-213ENST00000601981 TSHZ2Q9NRE2 1034 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 ZBTB40Q9NUA8 1239 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 FER1L6Q2WGJ9 1857 aa12.55□□□□□ -0.4
UPF1-213ENST00000601981 ITGA6P23229 1130 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 RPS8P62241 208 aaKnown RBP12.54□□□□□ -0.4
UPF1-213ENST00000601981 FOXO4P98177 505 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 FAM161AQ3B820 660 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 CCDC93Q567U6 631 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 MPHOSPH8Q99549 860 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 GREM2Q9H772 168 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 PCDHB15Q9Y5E8 787 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 LRRFIP2Q9Y608 721 aaKnown RBP12.54□□□□□ -0.4
UPF1-213ENST00000601981 CCDC88AQ3V6T2 1871 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 LRRC37AA6NMS7 1700 aa12.54□□□□□ -0.4
UPF1-213ENST00000601981 RABL6Q3YEC7 729 aaPredicted RBP12.53□□□□□ -0.4
UPF1-213ENST00000601981 RWDD1Q9H446 243 aaPredicted RBP12.53□□□□□ -0.4
UPF1-213ENST00000601981 ZNF219Q9P2Y4 722 aaPredicted RBP12.53□□□□□ -0.4
UPF1-213ENST00000601981 ZBTB7BO15156 539 aaPredicted RBP12.52□□□□□ -0.41
UPF1-213ENST00000601981 C21orf2O43822 256 aa12.52□□□□□ -0.41
UPF1-213ENST00000601981 IGHDP01880 384 aa12.52□□□□□ -0.41
UPF1-213ENST00000601981 HDAC1Q13547 482 aaPredicted RBP12.52□□□□□ -0.41
UPF1-213ENST00000601981 RTKN2Q8IZC4 609 aa12.52□□□□□ -0.41
UPF1-213ENST00000601981 CELF1Q92879 486 aaKnown RBP12.52□□□□□ -0.41
UPF1-213ENST00000601981 SEC31BQ9NQW1 1179 aa12.52□□□□□ -0.41
UPF1-213ENST00000601981 ATP6V0A2Q9Y487 856 aa12.52□□□□□ -0.41
UPF1-213ENST00000601981 SBF1O95248 1867 aa12.51□□□□□ -0.41
UPF1-213ENST00000601981 YBX3P16989 372 aaKnown RBP eCLIP12.51□□□□□ -0.41
UPF1-213ENST00000601981 EPHA10Q5JZY3 1008 aa12.51□□□□□ -0.41
UPF1-213ENST00000601981 ARHGAP27Q6ZUM4 889 aa12.51□□□□□ -0.41
UPF1-213ENST00000601981 SP8Q8IXZ3 490 aa12.51□□□□□ -0.41
UPF1-213ENST00000601981 ANKRD44Q8N8A2 993 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms