RNA–Protein interactions for RNA: ENST00000600628.2

SSBP4-208, Transcript of single stranded DNA binding protein 4, human

TSL 3

Gene SSBP4, Length 550 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SSBP4-208	ENST00000600628	ATP6V0A2	Q9Y487	856 aa		11.26	□□□□□ -0.61
SSBP4-208	ENST00000600628	IRS4	O14654	1257 aa	Predicted RBP	11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	KIF3C	O14782	793 aa		11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	FKBP4	Q02790	459 aa	Known RBP eCLIP	11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	GCKR	Q14397	625 aa		11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	CWF19L2	Q2TBE0	894 aa	Known RBP	11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	ALDH1L2	Q3SY69	923 aa		11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	BEND3	Q5T5X7	828 aa		11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	RPGR	Q92834	1020 aa	Known RBP	11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	TAOK3	Q9H2K8	898 aa		11.25	□□□□□ -0.61
SSBP4-208	ENST00000600628	FKBP5	Q13451	457 aa	Predicted RBP	11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	GRAP	Q13588	217 aa		11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	TMC4	Q7Z404	712 aa		11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	SP8	Q8IXZ3	490 aa		11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	GRAPL	Q8TC17	118 aa	Predicted RBP	11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	SSH1	Q8WYL5	1049 aa		11.24	□□□□□ -0.61
SSBP4-208	ENST00000600628	PCNT	O95613	3336 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	GLTPD2	A6NH11	291 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	POTEC	B2RU33	542 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628		F6X3S4	739 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	FZD9	O00144	591 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	PPEF1	O14829	653 aa	Predicted RBP	11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	PDE8A	O60658	829 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	CSF1R	P07333	972 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	TTLL11	Q8NHH1	800 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	CELF1	Q92879	486 aa	Known RBP	11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	VPS33B	Q9H267	617 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	NMRK2	Q9NPI5	230 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	UTY	O14607	1347 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	KDM2B	Q8NHM5	1336 aa		11.23	□□□□□ -0.61
SSBP4-208	ENST00000600628	PTPRC	P08575	1304 aa		11.22	□□□□□ -0.61
SSBP4-208	ENST00000600628	HSP90B1	P14625	803 aa	Known RBP	11.22	□□□□□ -0.61
SSBP4-208	ENST00000600628	SCN4A	P35499	1836 aa		11.22	□□□□□ -0.61
SSBP4-208	ENST00000600628	NEXN	Q0ZGT2	675 aa		11.22	□□□□□ -0.61
SSBP4-208	ENST00000600628	DDX46	Q7L014	1031 aa	Known RBP	11.22	□□□□□ -0.61
SSBP4-208	ENST00000600628		A0A1B0GUL6	1792 aa		11.21	□□□□□ -0.61
SSBP4-208	ENST00000600628	ALDH1L1	O75891	902 aa		11.21	□□□□□ -0.61
SSBP4-208	ENST00000600628	CTSW	P56202	376 aa		11.21	□□□□□ -0.61
SSBP4-208	ENST00000600628	SEC31B	Q9NQW1	1179 aa		11.21	□□□□□ -0.61
SSBP4-208	ENST00000600628	PODXL2	Q9NZ53	605 aa		11.21	□□□□□ -0.61
SSBP4-208	ENST00000600628	ZBED9	Q6R2W3	1325 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	TOMM70	O94826	608 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	IARS	P41252	1262 aa	Known RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	RARS	P54136	660 aa	Known RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	RPS8	P62241	208 aa	Known RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	FOXO4	P98177	505 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	CCDC152	Q4G0S7	254 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	RTL5	Q5HYW3	569 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	JARID2	Q92833	1246 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	KAZALD1	Q96I82	304 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	L3MBTL3	Q96JM7	780 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	RRAGC	Q9HB90	399 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	ZNF277	Q9NRM2	450 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	ZNF646	O15015	1829 aa	Predicted RBP	11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	ADAMTSL1	Q8N6G6	1762 aa		11.2	□□□□□ -0.62
SSBP4-208	ENST00000600628	PSME4	Q14997	1843 aa		11.19	□□□□□ -0.62
SSBP4-208	ENST00000600628	SPEF2	Q9C093	1822 aa		11.19	□□□□□ -0.62
SSBP4-208	ENST00000600628	DPY19L2	Q6NUT2	758 aa		11.19	□□□□□ -0.62
SSBP4-208	ENST00000600628	UBE3B	Q7Z3V4	1068 aa		11.19	□□□□□ -0.62
SSBP4-208	ENST00000600628	SCN9A	Q15858	1988 aa		11.19	□□□□□ -0.62
SSBP4-208	ENST00000600628	GRM8	O00222	908 aa		11.18	□□□□□ -0.62
SSBP4-208	ENST00000600628	KIAA2012	Q0VF49	1180 aa		11.18	□□□□□ -0.62
SSBP4-208	ENST00000600628	GREM2	Q9H772	168 aa		11.18	□□□□□ -0.62
SSBP4-208	ENST00000600628	ZNF541	Q9H0D2	1346 aa		11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	VEGFA	P15692	232 aa	Predicted RBP	11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	EPHA10	Q5JZY3	1008 aa		11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	C16orf71	Q8IYS4	520 aa	Predicted RBP	11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	RBM46	Q8TBY0	533 aa	Known RBP	11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	ARHGAP45	Q92619	1136 aa		11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	SRCIN1	Q9C0H9	1055 aa		11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	TMX4	Q9H1E5	349 aa	Predicted RBP	11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	BSDC1	Q9NW68	430 aa	Predicted RBP	11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	POLL	Q9UGP5	575 aa		11.17	□□□□□ -0.62
SSBP4-208	ENST00000600628	HSPA6	P17066	643 aa		11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	HNRNPU	Q00839	825 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	RABL6	Q3YEC7	729 aa	Predicted RBP	11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	MPND	Q8N594	471 aa		11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	SUPT20H	Q8NEM7	779 aa		11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	USP44	Q9H0E7	712 aa		11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	ZNF609	O15014	1411 aa		11.16	□□□□□ -0.62
SSBP4-208	ENST00000600628	IRS2	Q9Y4H2	1338 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	YDJC	A8MPS7	323 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	DDN	O94850	711 aa	Predicted RBP	11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	NBPF7	P0C2Y1	421 aa	Predicted RBP	11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	GPSM2	P81274	684 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	DPP8	Q6V1X1	898 aa	Predicted RBP	11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	GPC2	Q8N158	579 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	TBC1D16	Q8TBP0	767 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	CDC5L	Q99459	802 aa	Known RBP	11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	BCL2L13	Q9BXK5	485 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	SMC4	Q9NTJ3	1288 aa		11.15	□□□□□ -0.62
SSBP4-208	ENST00000600628	ITGA6	P23229	1130 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	FSTL1	Q12841	308 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	AOC3	Q16853	763 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	FAM161A	Q3B820	660 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	JDP2	Q8WYK2	163 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	MINPP1	Q9UNW1	487 aa		11.14	□□□□□ -0.63
SSBP4-208	ENST00000600628	XDH	P47989	1333 aa		11.13	□□□□□ -0.63
SSBP4-208	ENST00000600628	KIF16B	Q96L93	1317 aa		11.13	□□□□□ -0.63

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